. 2022 Aug 13;49:58–98. doi: 10.3767/persoonia.2022.49.02

Table 1.

Isolates and accession numbers used in the phylogenetic analyses. Isolates/sequences in bold were isolated/sequenced in the present study.

Species	Specimen or strain number¹	Origin	Status²	GenBank accession numbers³				References
Species	Specimen or strain number¹	Origin	Status²	ITS	LSU	RPB2	TUB2	References
Albicollum berberidicola	HEV4C	Spain		ON869276	ON869276	ON808456	ON808499	This study
	HEV19	Spain		ON869277	ON869277	N/A	ON808500	This study
	HG = CBS 147392	Greece	HT	ON869278	ON869278	ON808457	ON808501	This study
Albicollum canicolle	HEF = CBS 147281	Spain	ET	ON869279	ON869279	ON808458	ON808502	This study
	HEV	Spain		ON869280	ON869280	ON808459	ON808503	This study
	HEV8	Spain		ON869281	ON869281	ON808460	ON808504	This study
	HEV9	Spain		ON869282	ON869282	ON808461	ON808505	This study
	HEV11	Spain		ON869283	ON869283	ON808462	ON808506	This study
	HEV13	Spain		ON869284	ON869284	ON808463	ON808507	This study
	HEV18	Spain		ON869285	ON869285	ON808464	ON808508	This study
Albicollum longisporum	HEV3 = CBS 147283	Spain	HT	ON869286	ON869286	ON808465	ON808509	This study
	HEV4	Spain		ON869287	ON869287	ON808466	ON808510	This study
	HEV5	Spain		ON869288	ON869288	ON808467	ON808511	This study
	HEV6	Spain		ON869289	ON869289	ON808468	ON808512	This study
	HEV7	Spain		ON869290	ON869290	ON808469	ON808513	This study
	HEV10	Spain		ON869291	ON869291	ON808470	ON808514	This study
	HEV14	Spain		ON869292	ON869292	ON808471	ON808515	This study
	HEV15	Spain		ON869293	ON869293	ON808472	ON808516	This study
	HEV16	Spain		ON869294	ON869294	ON808473	ON808517	This study
	HEV17	Spain		ON869295	ON869295	ON808474	ON808518	This study
Albicollum novomexicanum	HB6019b	USA	HT	ON869296	ON869296	N/A	N/A	This study
Albicollum vincensii	ARQ = CBS 147286	Austria	ET	ON869297	ON869297	ON808475	ON808519	This study
	HEV1	Spain		ON869298	ON869298	ON808476	ON808520	This study
	HEV2	Spain		ON869299	ON869299	ON808477	ON808521	This study
	HEV12	Spain		ON869300	ON869300	ON808478	ON808522	This study
	RQ1	Italy		ON869301	ON869301	ON808479	ON808523	This study
Amphirosellinia fushanensis	HAST 91111209	Taiwan	HT	GU339496	N/A	GQ848339	GQ495950	Hsieh et al. (2010)
Amphirosellinia nigrospora	HAST 91092308	Taiwan	HT	GU322457	N/A	GQ848340	GQ495951	Hsieh et al. (2010)
Annulohypoxylon truncatum	CBS 140778	Texas	ET	KY610419	KY610419	KY624277	KX376352	Kuhnert et al. (2017), Wendt et al. (2018)
Anthostomelloides krabiensis	MFLUCC 15–0678	Thailand	HT	KX305927	KX305928	KX305929	N/A	Tibpromma et al. (2017)
Astrocystis concavispora	MFLUCC 14–0174	Italy		KP297404	KP340545	KP340532	KP406615	Daranagama et al. (2015)
Barrmaelia rhamnicola	CBS 142772	France	ET	MF488990	MF488990	MF488999	MF489018	Voglmayr et al. (2018)
Biscogniauxia marginata	MFLUCC 12–0740	France		KJ958407	KJ958408	KJ958409	KJ958406	Daranagama et al. (2015)
Camillea obularia	ATCC 28093	Puerto Rico		KY610384	KY610429	KY624238	KX271243	Wendt et al. (2018)
Clypeosphaeria mamillana	CBS 140735	France	ET	KT949897	KT949897	MF489001	MH704637	Jaklitsch et al. (2016), Voglmayr et al. (2018), Liu et al. (2019)
Collodiscula bambusae	GZUH 0102	China		KP054279	KP054280	KP276675	KP276674	Li et al. (2015)
Collodiscula fangjingshanensis	GZUH 0109	China	HT	KR002590	KR002591	KR002592	KR002589	Li et al. (2015)
Collodiscula japonica	CBS 124266	China		JF440974	JF440974	KY624273	KY624316	Jaklitsch & Voglmayr (2012), Wendt et al. (2018)
Creosphaeria sassafras	ST.MA. 14087	Argentina		KY610411	KY610468	KY624265	KX271258	Wendt et al. (2018)
Daldinia concentrica	CBS 113277	Germany		AY616683	KY610434	KY624243	KC977274	Triebel et al. (2005), Kuhnert et al. (2014), Wendt et al. (2018)
Dematophora buxi	99 J.D.R.	France		GU300070	N/A	GQ844780	GQ470228	Hsieh et al. (2010)
Dematophora necatrix	CBS 349.36	Argentina		AY909001	KF719204	KY624275	KY624310	Pelaez et al. (2008), Wendt et al. (2018)
Diatrype disciformis	CBS 197.49	Netherlands		N/A	DQ470964	DQ470915	N/A	Zhang et al. (2006)
Digitodochium amoenum	AAM	Germany		ON869302	ON869302	ON808480	ON808524	This study
	AAM1 = CBS 147285	Austria	ET	ON869303	ON869303	ON808481	ON808525	This study
	DIG	Norway		ON869304	ON869304	ON808482	ON808526	This study
Digitodochium rhodoleucum	NBRC 32296	Japan		LC146732	LC146732	N/A	N/A	Ban et al. (unpubl.)
Emarcea castanopsidicola	CBS 117105	Thailand	HT	AY603496	MK762717	MK791285	MK776962	Duong et al. (2004), Samarakoon et al. (2020)
Emarcea eucalyptigena	CBS 139908	Malaysia	HT	KR476733	MK762718	MK791286	MK776963	Crous et al. (2015), Samarakoon et al. (2020)
Entalbostroma erumpens	ICMP 21152	New Zealand	HT	KX258206	N/A	KX258204	KX258205	Johnston et al. (2016)
Entoleuca mammata	100 J.D.R.	France		GU300072	N/A	GQ844782	GQ470230	Hsieh et al. (2010)
Entonaema liquescens	ATCC 46302	USA		KY610389	KY610443	KY624253	KX271248	Wendt et al. (2018)
Entosordaria perfidiosa	CBS 142773	Austria	ET	MF488993	MF488993	MF489003	MF489021	Voglmayr et al. (2018)
Eutypa lata	UCR-EL1	USA		JGI	JGI	JGI	JGI
Graphostroma platystomum	CBS 270.87	France		JX658535	DQ836906	KY624296	HG934108	Zhang et al. (2006), Stadler et al. (2014), Koukol et al. (2015),
								Wendt et al. (2018)
Helicogermslita clypeata	MFLU 18-0852		HT	MW240666	MW240596	MW658647	MW775614	Samarakoon et al. (2022)
Helicogermslita somala	PAD S00034		ILT	MW626901,	N/A	N/A	N/A	Forin et al. (2021)
				MW626909⁵
Hypocreodendron sanguineum	J.D.R. 169	Mexico		GU322433	N/A	GQ844819	GQ487710	Hsieh et al. (2010)
Hypomontagnella monticulosa	MUCL 54604	French Guiana	ET	KY610404	KY610487	KY624305	KX271273	Wendt et al. (2018)
Hypoxylon fragiforme	MUCL 51264	Germany	ET	KC477229	KM186295	KM186296	KX271282	Stadler et al. (2013), Daranagama et al. (2015), Wendt et al.
								(2018)
Induratia alba	9-6	N/A		HM034857	HM034865	N/A	HM034844	Zhang et al. (2010)
Induratia coffeana	COAD 1842	Brazil	HT	KM514680	N/A	KP862881	N/A	Hongsanan et al. (2015)
Induratia fengyangensis	CGMCC 2862	China	HT	HM034856	HM034859	HM034849	HM034843	Zhang et al. (2010)
Induratia thailandica	MFLUCC 17-2669	Thailand	HT	MK762707	MK762714	MK791283	MK776960	Samarakoon et al. (2020)
Induratia yunnanensis	CGMCC 3.18908	China	HT	MG866046	MG866038	MG866059	MG866066	Chen et al. (2019)
Induratia ziziphi	MFLUCC 17-2662	Thailand	HT	MK762705	MK762712	MK791281	MK776958	Samarakoon et al. (2020)
Jackrogersella multiformis	CBS 119016	Germany	ET	KC477234	KY610473	KY624290	KX271262	Kuhnert et al. (2014, 2017), Wendt et al. (2018)
Kretzschmaria deusta	CBS 163.93	Germany		KC477237	KY610458	KY624227	KX271251	Stadler et al. (2013), Wendt et al. (2018)
Leptomassaria simplex	LSI = CBS 147282	Austria	ET	ON869305	ON869305	ON808483	ON808527	This study
	LSI1	Austria		ON869306	ON869306	ON808484	ON808528	This study
	LSI2	Austria		ON869307	ON869307	ON808485	ON808529	This study
	LSI3	Austria		ON869308	ON869308	N/A	N/A	This study
	LSI4	Austria		ON869309	ON869309	ON808486	ON808530	This study
	LSI5	Canada		ON869310	ON869310	ON808487	ON808531	This study
Linosporopsis ischnotheca	CBS 145761	Switzerland	ET	MN818952	MN818952	MN820708	MN820715	Voglmayr & Beenken (2020)
Linosporopsis ochracea	CBS 145999	Germany	ET	MN818958	MN818958	MN820714	MN820721	This study
Lopadostoma turgidum	CBS 133207	Austria	ET	KC774618	KC774618	KC774563	MF489024	Jaklitsch et al. (2014), Voglmayr et al. (2018)
Magnostiolata mucida	MFLU 19-2133	Thailand	HT	MW240673	MW240603	MW658652	MW775618	Samarakoon et al. (2020)
Nemania abortiva	BISH 467	USA	HT	GU292816	N/A	GQ844768	GQ470219	Hsieh et al. (2010)
Nemania beaumontii	HAST 405	Martinique		GU292819	N/A	GQ844772	GQ470222	Hsieh et al. (2010)
Nemania bipapillata	HAST 90080610	Taiwan		GU292818	N/A	GQ844771	GQ470221	Hsieh et al. (2010)
Nemania ethancrensonii	AEC = CBS 148337	USA	HT	ON869311	ON869311	ON808489	ON808533	This study
Nemania primolutea	HAST 91102001	Taiwan	HT	EF026121	N/A	GQ844767	EF025607	Hsieh et al. (2010)
Nemania serpens	HAST 235	Canada		GU292820	N/A	GQ844773	GQ470223	Hsieh et al. (2010)
Nemania sphaeriostoma	261 J.D.R.	USA		GU292821	N/A	GQ844774	GQ470224	Hsieh et al. (2010)
Nemania uda	EUU = CBS 148422	Austria		ON869312	ON869312	ON808488	ON808532	This study
Obolarina dryophila	MUCL 49882	France		GQ428316	GQ428316	KY624284	GQ428322	Pažoutová et al. (2010), Wendt et al. (2018)
Occultitheca rosae	HKAS 102393	China	HT	MW240672	MW240602	MW658651	MW775617	Samarakoon et al. (2020)
Oligostoma insidiosum	ANI = CBS 147280	Austria		ON869313	ON869313	ON808490	ON808534	This study
	ANI1 = CBS 147288	Switzerland	ET	ON869314	ON869314	ON808491	ON808535	This study
	ANR = CBS 147287	Austria	ET⁴	ON869315	ON869315	ON808492	ON808536	This study
	ANR1	Austria		ON869316	ON869316	ON808493	ON808537	This study
	ANR2	Austria		ON869317	ON869317	ON808494	ON808538	This study
	ANR3	Austria		ON869318	ON869318	ON808495	ON808539	This study
	OTI	Austria		ON869319	ON869319	ON808496	ON808540	This study
Podosordaria mexicana	WSP 176	Mexico		GU324762	N/A	GQ853039	GQ844840	Hsieh et al. (2010)
Podosordaria muli	WSP 167	Mexico	HT	GU324761	N/A	GQ853038	GQ844839	Hsieh et al. (2010)
Poronia pileiformis	WSP 88113001	Taiwan	ET	GU324760	N/A	GQ853037	GQ502720	Hsieh et al. (2010)
Poronia punctata	CBS 656.78	Australia	HT	KT281904	KY610496	KY624278	KX271281	Senanayake et al. (2015), Wendt et al. (2018)
Pyrenopolyporus hunteri	MUCL 52673	Ivory Coast	ET	KY610421	KY610472	KY624309	KU159530	Kuhnert et al. (2017), Wendt et al. (2018)
Rhopalostroma angolense	CBS 126414	Ivory Coast		KY610420	KY610459	KY624228	KX271277	Wendt et al. (2018)
Rosellinia aquila	MUCL 51703	France		KY610392	KY610460	KY624285	KX271253	Wendt et al. (2018)
Rosellinia corticium	MUCL 51693	France		KY610393	KY610461	KY624229	KX271254	Wendt et al. (2018)
Rostrohypoxylon terebratum	CBS 119137	Thailand	HT	DQ631943	DQ840069	DQ631954	DQ840097	Tang et al. (2007), Fournier et al. (2011)
Ruwenzoria pseudoannulata	MUCL 51394	D. R. Congo	HT	KY610406	KY610494	KY624286	KX271278	Wendt et al. (2018)
Sarcoxylon compunctum	CBS 359.61	South Africa		KT281903	KY610462	KY624230	KX271255	Senanayake et al. (2015), Wendt et al. (2018)
Spiririma gaudefroyi	HGA = CBS 147284	Spain	ET	ON869320	ON869320	ON808497	ON808541	This study
	HGA1	Spain		ON869321	ON869321	ON808498	ON808542	This study
Stilbohypoxylon elaeicola	Y.M.J. 173	French Guiana		EF026148	N/A	GQ844826	EF025616	Hsieh et al. (2010)
Stilbohypoxylon quisquiliarum	Y.M.J. 172	French Guiana		EF026119	N/A	GQ853020	EF025605	Hsieh et al. (2010)
Stromatoneurospora phoenix	BCC 82040	Thailand		MT735133	MT735133	MT742605	MT700438	Becker et al. (2020)
Thamnomyces dendroidea	CBS 123578	French Guiana	HT	FN428831	KY610467	KY624232	KY624313	Stadler et al. (2010), Wendt et al. (2018)
Xylaria acuminatilongissima	HAST 95060506	Taiwan	HT	EU178738	N/A	GQ853028	GQ502711	Hsieh et al. (2010)
Xylaria adscendens	865 J.D.R.	Thailand		GU322432	N/A	GQ844818	GQ487709	Hsieh et al. (2010)
Xylaria aethiopica	Y.M.J. 1136	Ethiopia	HT	MH790445	N/A	MH785222	MH785221	Fournier et al. (2018b)
Xylaria apoda	HAST 90080804	Taiwan		GU322437	N/A	GQ844823	GQ495930	Hsieh et al. (2010)
Xylaria arbuscula	CBS 126415	Germany		KY610394	KY610463	KY624287	KX271257	Fournier et al. (2011), Wendt et al. (2018)
Xylaria atrosphaerica	HAST91111214	Taiwan		GU322459	N/A	GQ848342	GQ495953	Hsieh et al. (2010)
Xylaria badia	HAST 95070101	Taiwan		GU322446	N/A	GQ844833	GQ495939	Hsieh et al. (2010)
Xylaria bambusicola	WSP 205	Taiwan	HT	EF026123	N/A	GQ844802	AY951762	Hsieh et al. (2010)
Xylaria brunneovinosa	HAST 720	Martinique	HT	EU179862	N/A	GQ853023	GQ502706	Hsieh et al. (2010)
Xylaria castorea	600 PDD	New Zealand		GU324751	N/A	GQ853018	GQ502703	Hsieh et al. (2010)
Xylaria cf. castorea	HAST 91092303	Taiwan		GU324752	N/A	GQ853019	GQ502704	Hsieh et al. (2010)
Xylaria crozonensis	HAST 398	France		GU324748	N/A	GQ848361	GQ502697	Hsieh et al. (2010)
Xylaria culleniae	189 J.D.R.	Thailand		GU322442	N/A	GQ844829	GQ495935	Hsieh et al. (2010)
Xylaria curta	HAST 494	Martinique		GU322444	N/A	GQ844831	GQ495937	Hsieh et al. (2010)
Xylaria digitata	HAST 919	Ukraine		GU322456	N/A	GQ848338	GQ495949	Hsieh et al. (2010)
Xylaria discolor	HAST 131023	USA	ET	JQ087405	N/A	JQ087411	JQ087414	Ju et al. (2012)
Xylaria enterogena	HAST 785	French Guiana		GU324736	N/A	GQ848349	GQ502685	Hsieh et al. (2010)
Xylaria frustulosa	HAST 92092010	Taiwan		GU322451	N/A	GQ844838	GQ495944	Hsieh et al. (2010)
Xylaria cf. glebulosa	HAST 431	French West Indies		GU322462	N/A	GQ848345	GQ495956	Hsieh et al. (2010)
Xylaria globosa	HAST 775	French West Indies		GU324735	N/A	GQ848348	GQ502684	Hsieh et al. (2010)
Xylaria grammica	HAST 479	Taiwan		GU300097	N/A	GQ844813	GQ487704	Hsieh et al. (2010)
Xylaria haemorrhoidalis	HAST 89041207	Taiwan		GU322464	N/A	GQ848347	GQ502683	Hsieh et al. (2010)
Xylaria cf. heliscus	HAST 88113010	Taiwan		GU324742	N/A	GQ848355	GQ502691	Hsieh et al. (2010)
Xylaria hypoxylon	CBS 122620	Sweden	ET	KY610407	KY610495	KY624231	KX271279	Sir et al. (2016b), Wendt et al. (2018)
Xylaria ianthinovelutina	HAST 553	French West Indies		GU322441	N/A	GQ844828	GQ495934	Hsieh et al. (2010)
Xylaria intracolorata	HAST 90080402	Taiwan		GU324741	N/A	GQ848354	GQ502690	Hsieh et al. (2010)
Xylaria laevis	HAST 419	French West Indies		GU324746	N/A	GQ848359	GQ502695	Hsieh et al. (2010)
Xylaria longipes	CBS 148.73	Germany		MH860649	MH872351	KU684280	KU684204	Vu et al. (2019), U‘Ren et al. (2016)
Xylaria luteostromata	HAST 508	French West Indies		GU324739	N/A	GQ848352	GQ502688	Hsieh et al. (2010)
Xylaria multiplex	HAST 580	Martinique		GU300098	N/A	GQ844814	GQ487705	Hsieh et al. (2010)
Xylaria ophiopoda	HAST 93082805	Taiwan		GU322461	N/A	GQ848344	GQ495955	Hsieh et al. (2010)
Xylaria oxyacanthae	J.D.R. 859	USA		GU322434	N/A	GQ844820	GQ495927	Hsieh et al. (2010)
Xylaria palmicola	604 PDD	New Zealand		GU322436	N/A	GQ844822	GQ495929	Hsieh et al. (2010)
Xylaria phyllocharis	HAST 528	French West Indies		GU322445	N/A	GQ844832	GQ495938	Hsieh et al. (2010)
Xylaria plebeja	HAST 91122401	Taiwan		GU324740	N/A	GQ848353	GQ502689	Hsieh et al. (2010)
Xylaria polymorpha	MUCL 49884	France		KY610408	KY610464	KY624288	KX271280	Wendt et al. (2018)
Xylaria reevesiae	H.M.H. 2010g	Taiwan	HT	GU322435	N/A	GQ844821	GQ495928	Hsieh et al. (2010)
Xylaria regalis	HAST 92072001	Taiwan		GU324744	N/A	GQ848357	GQ502693	Hsieh et al. (2010)
Xylaria schweinitzii	HAST 92092023	Taiwan		GU322463	N/A	GQ848346	GQ495957	Hsieh et al. (2010)
Xylaria scruposa	HAST 497	French West Indies		GU322458	N/A	GQ848341	GQ495952	Hsieh et al. (2010)
Xylaria telfairii	HAST 421	French West Indies		GU324737	N/A	GQ848350	GQ502686	Hsieh et al. (2010)
Xylaria vivantii	H.M.H. 2010h	French West Indies	HT	GU322438	N/A	GQ844824	GQ495931	Hsieh et al. (2010)

¹ Abbreviations: ATCC: American Type Culture Collection, Manassas, USA; BISH: Bishop Museum, Honolulu, USA; BCC: BIOTEC Culture Collection, National Center for Genetic Engineering and Biotechnology, Khlong Luang, Thailand; CBS: Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands; CGMCC: China General Microbiological Culture Collection Center, Beijing, China; COAD: Otávio de Almeida Drumond culture collection, Universidade Federal de Viçosa, Brazil; GZUH: Guizhou University, Guiyang, China; HAST: Academia Sinica, Taipei, Taiwan; HKAS: Herbarium of Cryptogams Kunming Institute of Botany Academia Sinica, China; H.M.H.: Academia Sinica, Taipei, Taiwan; Huei-Mei Hsieh ICMP: International Collection of Microorganisms from Plants, Auckland, New Zealand; J.D.R.: Jack D. Rogers, Washington State University, Pullman, USA; J.F., Jacques Fournier, Rimont, France; MFLU, MFLUCC: Mae FahLuang University, Chiang Rai, Thailand; MUCL: Università Catholique de Louvain, Louvain-la-Neuve, Belgium; NBRC: Biological Resource Center, National Institute of Technology and Evaluation, Tokyo, Japan; PAD: Botanical Museum-Herbarium, University degli Studi di Padova, Italy; ST.MA.: Marc Stadler, Helmholtz-Zentrum für Infektionsforschung, Braunschweig, Germany; UCR: University of California, Riverside, USA; Y.M.J.: Yu-Ming Ju, Academia Sinica, Taipei, Taiwan; WSP, Washington State University, Pullman, USA.

² ET epitype; HT holotype; ILT isolectotype.

³ N/A not available; JGI sequences retrieved from JGI-DOE (http://genome.jgi.doe.gov/).

⁴ Ex-epitype strain of Anthostoma rhenanum.

⁵ ITS1 and ITS2 sequences combined for analyses.