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. 2023 Dec 14;27(1):108728. doi: 10.1016/j.isci.2023.108728
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Purified NA/LE mouse anti-human CD28 (clone 28.2) BD Pharmingen Cat# 555725; RRID:AB_2130052
Purified NA/LE mouse anti-human CD49d (clone L25) BD Pharmingen Cat# 555501; RRID:AB_396068
CD4 ECD (clone SFCI12T4D11) Beckman Coulter Cat# 6604727; RRID:AB_394488
CD8 BV510 (clone RPA-8) Biolegend Cat# 301048; RRID:AB_2561942
CD3 BV650 (clone OKT3) Biolegend Cat# 317324; RRID:AB_2563352
IFN-g AlexaFluor® 700 (clone B27) BD Biosciences Cat# 557995; RRID:AB_396977
TNF-a BV786 (clone Mab11) Biolegend Cat# 502948; RRID:AB_2565858
IL-2 APC (clone MQ1-17H12) Biolegend Cat# 500310; RRID:AB_315097
Anti-human IgG (Fab-specific)-horseradish peroxidase Sigma Aldrich Cat# A0170; RRID:AB_257868

Biological samples

Unvaccinated children blood samples Red Cross War Memorial Children’s Hospital https://www.childrenshospitaltrust.org.za/the-hospital/
Unvaccinated children blood samples Mbekweni and TC Newman clinics https://www.westerncape.gov.za/facility/mbekweni-community-day-centre-cdc
https://www.westerncape.gov.za/facility/tc-newman-community-day-centre-cdc
Convalescent health care worker blood samples Groote Schuur Hospital https://www.gsh.co.za

Chemicals, peptides, and recombinant proteins

Brefeldin A Sigma Aldrich Cat# B7651-5MG
PepTivator® SARS-CoV-2 Prot_S Miltenyi Biotech Cat # 130-126-701
Peptide Array, SARS-Related Coronavirus 2 Nucleocapsid (N) Protein BEI resources Cat# 52404
Peptide Array, SARS-Related Coronavirus 2 Membrane (M) Protein BEI resources Cat# 52403
PtX™ SARS-CoV-2 Spike Protein (S1, Rabbit FC) Cape Bio Pharms (Pty) Ltd Cat# CB_0002.2
Recombinant SARS-CoV-2 Spike RBD
His-tag (HEK293 Expressed)
Bio-Techne Cat#10500-CV
BTA SARS-CoV-2 Nucleocapsid (1mg) BioTech Africa Cat# BA25-C
Recombinant HCoV-HKU1 spike (HEK293F Expressed) In-house N/A
Recombinant HCoV-OC43 spike (HEK293F Expressed) In-house N/A
O-phenylenediamine dihydrochloride (OPD), Sigmafast TM Sigma Aldrich P9187-50SET
3′,5,5′-Tetramethylbenzidine (TMB) substrate Thermofisher Scientific Cat# 34029
Casein, Hammarsten Bovine Sigma Aldrich E0789-500
Phosphate buffered saline with 0.05% tween, pH 7.4 Sigma Aldrich P3563-10PAK

Critical commercial assays

BD FACS™ Lysing Solution BD Biosciences Cat # 349202
BD Perm/Wash Buffer BD Biosciences Cat# 554723
CellFIX buffer BD Biosciences Cat# 340181

Experimental models: Cell lines

Human Embryonic Kidney (HEK) 293F Dr Nicole Doria-Rose, VRC, USA N/A

Recombinant DNA

HCoV-HKU1 and -OC43 spike plasmids Dr Gaurav Kwatra and Prof Shabir A. Madhi, Wits VIDA, SA
Prof Barney Graham, VRC, USA
N/A

Software and algorithms

FACSDiva 9 BD Biosciences https://www.bdbiosciences.com
FlowJo 10 FlowJo, LLC https://www.flowjo.com
Graphpad Prism 9 Graphpad https://graphpad.com
BioRender BioRender https://biorender.com