REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Purified NA/LE mouse anti-human CD28 (clone 28.2) | BD Pharmingen | Cat# 555725; RRID:AB_2130052 |
Purified NA/LE mouse anti-human CD49d (clone L25) | BD Pharmingen | Cat# 555501; RRID:AB_396068 |
CD4 ECD (clone SFCI12T4D11) | Beckman Coulter | Cat# 6604727; RRID:AB_394488 |
CD8 BV510 (clone RPA-8) | Biolegend | Cat# 301048; RRID:AB_2561942 |
CD3 BV650 (clone OKT3) | Biolegend | Cat# 317324; RRID:AB_2563352 |
IFN-g AlexaFluor® 700 (clone B27) | BD Biosciences | Cat# 557995; RRID:AB_396977 |
TNF-a BV786 (clone Mab11) | Biolegend | Cat# 502948; RRID:AB_2565858 |
IL-2 APC (clone MQ1-17H12) | Biolegend | Cat# 500310; RRID:AB_315097 |
Anti-human IgG (Fab-specific)-horseradish peroxidase | Sigma Aldrich | Cat# A0170; RRID:AB_257868 |
Biological samples | ||
Unvaccinated children blood samples | Red Cross War Memorial Children’s Hospital | https://www.childrenshospitaltrust.org.za/the-hospital/ |
Unvaccinated children blood samples | Mbekweni and TC Newman clinics |
https://www.westerncape.gov.za/facility/mbekweni-community-day-centre-cdc https://www.westerncape.gov.za/facility/tc-newman-community-day-centre-cdc |
Convalescent health care worker blood samples | Groote Schuur Hospital | https://www.gsh.co.za |
Chemicals, peptides, and recombinant proteins | ||
Brefeldin A | Sigma Aldrich | Cat# B7651-5MG |
PepTivator® SARS-CoV-2 Prot_S | Miltenyi Biotech | Cat # 130-126-701 |
Peptide Array, SARS-Related Coronavirus 2 Nucleocapsid (N) Protein | BEI resources | Cat# 52404 |
Peptide Array, SARS-Related Coronavirus 2 Membrane (M) Protein | BEI resources | Cat# 52403 |
PtX™ SARS-CoV-2 Spike Protein (S1, Rabbit FC) | Cape Bio Pharms (Pty) Ltd | Cat# CB_0002.2 |
Recombinant SARS-CoV-2 Spike RBD His-tag (HEK293 Expressed) |
Bio-Techne | Cat#10500-CV |
BTA SARS-CoV-2 Nucleocapsid (1mg) | BioTech Africa | Cat# BA25-C |
Recombinant HCoV-HKU1 spike (HEK293F Expressed) | In-house | N/A |
Recombinant HCoV-OC43 spike (HEK293F Expressed) | In-house | N/A |
O-phenylenediamine dihydrochloride (OPD), Sigmafast TM | Sigma Aldrich | P9187-50SET |
3′,5,5′-Tetramethylbenzidine (TMB) substrate | Thermofisher Scientific | Cat# 34029 |
Casein, Hammarsten Bovine | Sigma Aldrich | E0789-500 |
Phosphate buffered saline with 0.05% tween, pH 7.4 | Sigma Aldrich | P3563-10PAK |
Critical commercial assays | ||
BD FACS™ Lysing Solution | BD Biosciences | Cat # 349202 |
BD Perm/Wash Buffer | BD Biosciences | Cat# 554723 |
CellFIX buffer | BD Biosciences | Cat# 340181 |
Experimental models: Cell lines | ||
Human Embryonic Kidney (HEK) 293F | Dr Nicole Doria-Rose, VRC, USA | N/A |
Recombinant DNA | ||
HCoV-HKU1 and -OC43 spike plasmids | Dr Gaurav Kwatra and Prof Shabir A. Madhi, Wits VIDA, SA Prof Barney Graham, VRC, USA |
N/A |
Software and algorithms | ||
FACSDiva 9 | BD Biosciences | https://www.bdbiosciences.com |
FlowJo 10 | FlowJo, LLC | https://www.flowjo.com |
Graphpad Prism 9 | Graphpad | https://graphpad.com |
BioRender | BioRender | https://biorender.com |