Table 3.
Strains used in the phylogenetic analysis of Scolecobasidium and Verruconis and GenBank accession numbers.
| Species | Strain 1 | Host and substrate | Locality | GenBank accession numbers 2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| SSU | ITS | LSU | act1 | tub2 | tef1 | ||||
| S. ailanthi | MFLUCC 17-0923* | On fallen pod of Ailanthus sp. | Thailand | MK347838 | MK347730 | MK347947 | MK412893 | MK412883 | – |
| MFLU 18-2110 | On fallen pod of Ailanthus sp. | Thailand | MK347839 | MK347731 | MK347948 | MK412892 | MK412881 | – | |
| S. anellii | CBS 284.64* | Stalactite | Italy | KF156070 | FR832477 | KF156138 | KF155912 | KF156184 | KF155995 |
| S. anomalum | CBS 131816* | Lascaux Cave | France | KF156065 | HE575201 | KF156137 | KF155935 | KF156194 | KF155986 |
| S. aquaticum | CBS 140316* | Silicone | Germany | KX668260 | KX668258 | KX668259 | – | – | – |
| S. bacilliforme | CBS 100442* | On stainless steel biofilm in drinking water | Germany | KP798638 | KP798632 | KP798635 | KT272051 | KT272059 | KT272070 |
| S. blechni | CBS 146055* | Leaves of Blechnum capense | South Africa | – | MN562134 | MN567641 | – | MN556843 | MN556826 |
| S. camellicola | GUCC 18242* | On decaying Camellia sinensis leaf litter | China | MZ503654 | MZ503728 | MZ503761 | MZ546837 | MZ546907 | MZ546874 |
| GUCC 18243 | On decaying Camellia sinensis leaf litter | China | MZ503655 | MZ503729 | MZ503762 | MZ546838 | MZ546908 | MZ546875 | |
| GUCC 18244 | Isolated from forest litter | China | MZ503656 | MZ503730 | MZ503763 | MZ546839 | MZ546909 | MZ546876 | |
| S. capsici | CBS 142096* | Leaf of Capsicum annuum | Thailand | – | KY173427 | KY173518 | – | – | – |
| S. coiledmyces | GUCC 18245* | Isolated from lawn soil | China | MZ503657 | MZ503731 | MZ503764 | MZ546840 | MZ546910 | MZ546877 |
| S. constrictum | CBS 211.53* | Soil | Canada: Ontario | KF156073 | HQ667519 | KF156148 | KF155941 | KF156187 | KF156005 |
| CBS 131913 | Human, cutaneous mycosis | Thailand | KF156071 | KF156025 | KF156146 | KF155940 | KF156176 | KF156006 | |
| GUCC 18255 | Isolated from dead branches | China | MZ503667 | MZ503741 | MZ503774 | MZ546850 | MZ546920 | MZ546887 | |
| GUCC 18256 | Isolated from forest litter | China | MZ503668 | MZ503742 | MZ503775 | MZ546851 | MZ546921 | MZ546888 | |
| GUCC 18257 | Isolated from soil | China | MZ503669 | MZ503743 | MZ503776 | MZ546852 | MZ546922 | MZ546889 | |
| GUCC 18258 | Isolated from lawn soil | China | MZ503670 | MZ503744 | MZ503777 | MZ546853 | MZ546923 | MZ546890 | |
| S. cordanae | CBS 475.80* | Mauritia minor , leaf litter | Colombia | KF156058 | KF156022 | KF156122 | HQ916976 | KF156197 | KF155981 |
| CBS 412.51 | Not available | United States | KF156056 | HQ667540 | KF156123 | KF155907 | KF156200 | KF155980 | |
| S. crassihumicola | CBS 120700 | Soil | Papua New Guinea | KJ867431 | KJ867429 | KJ867430 | KJ867427 | KJ867433 | KJ867428 |
| S. dracaenae | CBS 141323* | Leaf spots of Dracaena reflexa | USA | – | KX228283 | KX228334 | – | – | KX228377 |
| S. echinulatum | GUCC 18247* | Isolated from soil | China | MZ503659 | MZ503733 | MZ503766 | MZ546842 | MZ546912 | MZ546879 |
| GUCC 18248 | Isolated from soil | China | MZ503660 | MZ503734 | MZ503767 | MZ546843 | MZ546913 | MZ546880 | |
| S. ellipsoideum | CBS 131796* | Soil | China | – | MN077367 | – | – | – | – |
| GUCC 18264 | Isolated from soil | China | MZ503676 | MZ503750 | MZ503783 | MZ546859 | MZ546929 | MZ546896 | |
| GUCC 18265 | Isolated from submerged wood | China | MZ503677 | MZ503751 | MZ503784 | MZ546860 | MZ546930 | MZ546897 | |
| GUCC 18266 | Isolated from forest litter | China | MZ503678 | MZ503752 | MZ503785 | MZ546861 | MZ546931 | MZ546898 | |
| S. ferulica | IRAN3232C* | Root of Ferula ovina | Iran | – | MF186874 | MH400207 | – | – | – |
| S. gamsii | CBS 239.78* | Caryota plumosa , leaf | Sri Lanka | KF156088 | KF156019 | KF156150 | KF155936 | KF156190 | KF155982 |
| S. globale | CBS 119644* | Indoor sample, house | Germany | KF961108 | KF961086 | KF961097 | KF956086 | KF961065 | KF961075 |
| CBS 135924 | Bathroom; black biofilm, sink drain | Germany | KF961107 | KF961092 | KF961104 | KF956092 | KF961070 | KF961079 | |
| GUCC 18249 | From forest humus | China | MZ503661 | MZ503735 | MZ503768 | MZ546844 | MZ546914 | MZ546881 | |
| GUCC 18250 | From soil | China | MZ503662 | MZ503736 | MZ503769 | MZ546845 | MZ546915 | MZ546882 | |
| S. guangxiensis | SS23* | Soil and sugarcane root | China | MK929277 | MK934570 | MK956169 | – | – | – |
| X22 | Soil and sugarcane root | China | MK961269 | MK961215 | MK961247 | – | – | – | |
| S. helicteris | NFCCI 4310* | Living leaves of Helicteris isora | India | – | MK014833 | – | – | MK321318 | – |
| S. humicola | CBS 116655* | Peat soil | Canada: Ontario | KF156068 | HQ667521 | KF156124 | KF155904 | KF156195 | KF155984 |
| S. icarus | CBS 536.69* | Forest soil | Canada: Ontario | KF156084 | HQ667524 | KF156132 | KF155944 | KF156174 | KF156009 |
| CBS 423.64 | Rhizosphere | Netherlands | KF156085 | HQ667523 | KF156131 | KF155943 | KF156173 | KF156008 | |
| S. lascauxense | CBS 131815* | Black stain on cave sediment | France | KF156069 | FR832474 | KF156136 | KF155911 | KF156183 | KF155994 |
| S. leishanicola | HGUP 1808* | Soil | China | MK377071 | MK377301 | MK377073 | – | – | – |
| GUCC 18259 | Isolated from soil | China | MZ503671 | MZ503745 | MZ503778 | MZ546854 | MZ546924 | MZ546891 | |
| S. longiphorum | CBS 435.76* | In excrement of Insecta , and Quercus | Japan | KF156060 | KF156038 | KF156135 | KF155908 | KF156182 | KF155978 |
| S. macrozamiae | CBS 137971* | Macrozamia , leaf litter | Australia | – | KJ869123 | KJ869180 | – | – | – |
| CBS 102491 | On leaf litter of Macrozamia | Australia | KF156092 | KF156021 | KF156152 | KF155938 | KF156191 | KF155983 | |
| S. minimum | CBS 510.71* | Gossypium arboreum , rhizosphere | Nigeria | KF156087 | HQ667522 | KF156134 | KF155945 | KF156172 | KF156007 |
| CBS 119792 | Soil | India | KF156086 | KF156027 | KF156133 | KF155946 | KF156175 | KT272073 | |
| GUCC 18260 | From forest humus | China | MZ503672 | MZ503746 | MZ503779 | MZ546855 | MZ546925 | MZ546892 | |
| S. mirabilis | CBS 413.51* | Breathing regulator for diver | Netherlands | KF156076 | HQ667536 | KF156140 | KF155957 | KF156164 | KF156001 |
| S. musae | CBS 729.95* | Regulator of diver | Netherlands | KF156082 | KF156029 | KF156144 | KF155948 | KF156171 | KF155999 |
| S. musicola | CBS 144441* | On leaves of Musa sp. (Musaceae ) | Malaysia | – | MH327824 | MH327860 | – | MH327898 | MH327887 |
| S. obovoideum | GUCC 18246* | Isolated from forest litter | China | MZ503658 | MZ503732 | MZ503765 | MZ546841 | MZ546911 | MZ546878 |
| S. olivaceum | CBS 137170* | Man, bronchoalveolar lavage fluid | USA: Utah | LM644548 | LM644521 | LM644564 | LM644600 | LM644605 | KT272067 |
| S. pandanicola | CBS 140660* | Pandanus utilis , leaves | France | – | KT950850 | KT950864 | – | – | – |
| S. phaeophorum | CBS 206.96* | Leaf in coastal rain forest | Papua New Guinea | KP798637 | KP798631 | KP798634 | KT272054 | KT272062 | KT272098 |
| S. podocarpi | CBS 143174* | Podocarpus grayae , leaves | Australia | – | MG386032 | MG386085 | – | – | MG386162 |
| S. podocarpicola | CBS 146057* | Leaves of Podocarpus latifolius | South Africa | – | MN562138 | MN567645 | – | – | – |
| S. ramosum | CBS 137173* | Isolated from nail of Homo sapiens | USA: California | LM644551 | LM644524 | LM644567 | LM644603 | LM644608 | KT272069 |
| CBS 137171 | Skin | United States | LM644549 | LM644522 | LM644565 | LM644601 | LM644606 | KT272068 | |
| GUCC 18261 | From forest litter | China | MZ503673 | MZ503747 | MZ503780 | MZ546856 | MZ546926 | MZ546893 | |
| GUCC 18262 | From soil | China | MZ503674 | MZ503748 | MZ503781 | MZ546857 | MZ546927 | MZ546894 | |
| GUCC 18263 | From forest litter | China | MZ503675 | MZ503749 | MZ503782 | MZ546858 | MZ546928 | MZ546895 | |
| S. robustum | CBS 112.97* | Leaf litter of Ouercus ilex | Spain | KP798639 | KP798633 | KP798636 | KT272052 | KT272060 | KT272071 |
| S. sexuale | CBS 135765* | Swabs in a laboratory | South Africa | KF156089 | KF156018 | KF156118 | KF155902 | KF156189 | KF155976 |
| CBS 131965 | Ant | Brazil | KF156090 | KF156017 | KF156119 | KF155903 | KF156188 | KF155977 | |
| S. terreum | CBS 203.27* | From soil | USA: Louisiana | – | HQ667544 | – | – | HQ877665 | – |
| S. tshawytschae | CBS 100438* | On young Oncorhynchus tshawytscha | USA: California | KF156062 | HQ667562 | KF156126 | KF155918 | KF156180 | KF155990 |
| CBS 228.66 | Peat-bog soil | Ireland | KF156064 | KF156016 | KF156128 | KF155915 | KF156179 | KF155992 | |
| GUCC 18251 | From lawn soil | China | MZ503663 | MZ503737 | MZ503770 | MZ546846 | MZ546916 | MZ546883 | |
| GUCC 18252 | From plant litter | China | MZ503664 | MZ503738 | MZ503771 | MZ546847 | MZ546917 | MZ546884 | |
| GUCC 18253 | From soil | China | MZ503665 | MZ503739 | MZ503772 | MZ546848 | MZ546918 | MZ546885 | |
| GUCC 18254 | From soil | China | MZ503666 | MZ503740 | MZ503773 | MZ546849 | MZ546919 | MZ546886 | |
| S. variabile | NBRC 32268 | From soil | Canada: Ontario | EU107353 | DQ307334 | EU107310 | – | – | DQ307356 |
| S. verrucaria | GUCC 18240* | From soil | China | MZ503652 | MZ503726 | MZ503759 | MZ546835 | MZ546905 | MZ546872 |
| S. verrucosum | CBS 383.81* | From soil | India: Kerala | KF156067 | KF156015 | KF156129 | KF155910 | KF156185 | KT272099 |
| S. zunyiense | GUCC 18241* | From forest litter | China | MZ503653 | MZ503727 | MZ503760 | MZ546836 | MZ546906 | MZ546873 |
| V. calidifluminalis | CBS 125818* | Water of a hot stream | Japan | KF156046 | AB385698 | KF156108 | KF155901 | KF156202 | KF155959 |
| CBS 125817 | Water of a hot stream | Japan | KF156045 | AB385699 | KF156107 | KF155900 | KF156201 | KF155958 | |
| V. cylindricalis | GUCC 18299* | From forest humus | China | MZ503680 | MZ503754 | MZ503787 | MZ546863 | MZ546933 | MZ546900 |
| V. gallopava | CBS 437.64* | Meleagris gallopavo , brain abscess | United States | KF156053 | HQ667553 | KF156112 | HQ916989 | KF156203 | KF155968 |
| CBS 118.91 | Man | United States | KF156047 | HQ667551 | KF282655 | KF155932 | HQ877643 | JF440539 | |
| CBS 867.95 | Sputum from patient with cardiac | United States | KF156051 | HQ667561 | KF282657 | KF155928 | KF156213 | KF155972 | |
| CBS 116660 | Human, transplantation | United States | KF156048 | HQ667557 | KF156115 | KF155929 | KF156206 | KF155969 | |
| V. hainanensis | YMF1.04165* | From leaves of a dicotyledonous plant | China | MK248267 | MK244397 | MK248269 | MK248271 | – | MK248272 |
| V. heveae | MFLUCC 17-0092* | On dried latex on bark of Hevea brasiliensis | Thailand | – | MH602349 | MH602348 | – | – | – |
| V. mangrovei | NFCCI-4390* | On decaying wood of Excoecaria agallocha | India | MN241147 | MN782361 | MN241144 | – | MN848140 | – |
| NFCCI-4391 | On decaying wood of Excoecaria agallocha | India | MN241148 | MN782362 | MN241145 | – | MN848141 | – | |
| V. panacis | CBS 142802* | From the root of Panax notoginseng | China | MF536879 | MF536882 | MF536880 | – | MF536883 | MF536881 |
| V. pseudotricladiata | YMF1.04915* | Leaves of a broad-leaf species in a stream | China | MK248268 | MK244396 | MK248270 | – | MK253013 | MK248273 |
| V. terricola | CBS 131795* | Isolated from soil | China | – | MK810925 | MK810811 | – | – | – |
| V. thailandica | CBS 145768* | From soil | Thailand | – | MN794375 | MN794352 | – | – | – |
| GUCC 18267 | Isolated from the humus soil in the stream | China | MZ503679 | MZ503753 | MZ503786 | MZ546862 | MZ546932 | MZ546899 | |
| V. tricladiata | NBRC 30208 | On rotten leaves | Bismarck Archipelago | EU107354 | – | EU107286 | – | – | DQ307352 |
| V. verruculosa | CBS 119775* | Grassland soil | India | KF156055 | KF156014 | KF156106 | KF155919 | KF156193 | KF155974 |
| Pseudosigmoidea excentrica | CBS 469.95* | Lauraceae , leaf litter | Cuba | KF156096 | HQ667543 | KF282669 | KF155934 | MK926478 | KF155975 |
| Sympoventuria capensis | CBS 120136* | Eucalyptus sp., leaf litter | South Africa | KF156094 | MK810921 | MK810808 | – | MK926481 | MK888745 |
1 CBS: Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands; CPC: Culture collection of Pedro Crous, housed at Westerdijk Fungal Biodiversity Institute; CGMCC: Chinese General Microbiological Culture Collection Center, Beijing, China; GUCC: Culture Collection of the Department of Plant Pathology, Agriculture College, Guizhou University, China; HGUP: Herbarium of the Department of Plant Pathology, Agricultural College, Guizhou University, China; ICMP: International Collection of Micro-organisms from Plants, Landcare Research, Private Bag 92170, Auckland, New Zealand; IRAN: Fungal Culture Collections of the Iranian Research Institute of Plant Protection; MFLU (CC): Mae Fah Luang University Culture Collection, Chiang Ria, Thailand; MUCL: Universite Catholique de Louvain, Louvain-la-Neuve, Belgium. MTCC: Institute of Microbial Technology, Chandigarh, India; NBRC: Biological Resource Center; NFCCI: National Fungal Culture Collection of India, Pune, India.
2 ITS: internal transcribed spacers and intervening 5.8S nrDNA; LSU: partial large subunit (28S) nrRNA gene; SSU: partial small subunit (18S) nrRNA gene; act1: actin; tub2 : partial β-tubulin gene; tef1: partial translation elongation factor 1-alpha gene; rpb2: partial DNA-directed RNA polymerase II second largest subunit gene. Accession numbers of sequences generated in this study are in bold; – indicates unavailable sequences or unknown collection data.
3* Ex-holotype or ex-type strains.