TABLE 2.
PCR primers
| Target | Sequencea | Annealing temp (°C) | References |
|---|---|---|---|
| vsp family | 5′-AAGTCTGACGGAACAGTACT-3′ | 50 | 7, this study |
| 5′-GTTATTTTGAGAAGGTTTTTC-3′ | |||
| vlp family | |||
| α subfamily | 5′-CTAATGATAGGWTGTGGACAAC-3′ | 55 | 7, this study |
| 5′-CTCAAGAACATTCTTTACTGTC-3′ | |||
| β subfamily | 5′-GTGATGCATTAGGATTTAATGC-3′ | 55 | 7, this study |
| 5′-CCTAATACCTTATTTACWGCAC-3′ | |||
| γ subfamily | 5′-CTAGTGACCCAATTGCTAATGT-3′ | 55 | 7, this study |
| 5′-TCTAGTGCTTTAGTAATTGCAC-3′ | |||
| δ subfamily | 5′-ATACTAAGAAAAGTGATATAGG-3′ | 50 | 7, this study |
| 5′-CCATTGCTCGCAGTGCAATGCC-3′ | |||
| Flagellin gene | 5′-ACATATTCAGATGCAGACAGAGGT-3′ | 60 | 39, this study |
| 5′-GCAATCATTGCCATTGCAGATTGT-3′ |
W, A or T.