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. 2024 Jan 4;40(1):btad786. doi: 10.1093/bioinformatics/btad786

Table 2.

Accuracy computed for the CATH annotation transfer analysis as in Heinzinger et al. (2022).a

ProstT5
 ProtT5
 ESM-1b
 Not pLMs-based
EBA EBAplain AD EBA EBAplain ProtTucker TM-vec AD EBA EBAplain AD Foldseek HMMER MMseqs2
C 91 79 86 87 82 88 89 84 89 75 79 77 70 53
A 84 66 75 77 68 77 80 67 78 59 61 73 60 33
T 78 55 63 74 63 68 71 57 70 54 50 59 59 21
H 88 61 67 85 74 79 81 64 77 61 57 77 77 25
a

The reported EBA and EBAplain values are normalized according to the length of the longer sequence in each comparison: EBAmin. Best performance for each CATH category in bold.