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. 2024 Jan 3;9(2):2032–2047. doi: 10.1021/acsomega.3c07662

Table 2. Max Data Upload, Software, Web Server, and Variation Types of Ten Coding Frameshift Small Indels Predictors.

tool max data uploada software availa webserver availa type of variations
PROVEAN web-based version has been retired YES NO SNV, insertions and deletions (<6AA)
SIFT Indel <100 raw YES YES Insertions and deletions (<5 bp)
CADD <2 MB YES YES SNV, insertions and deletions (<50 bp)
DDIG-IN Multiple Variations NO YES NFS/FS indels, nonsense, nonymous
VEST-Indel 100–1000000 variations NO YES In-frame, frameshift
MutPred-LOF <100 variations YES YES Frameshift stop-loss
PredCID <500 indels YES YES Insertions and deletions
SPD_Pred N.M. NO YES Single point deletions
PROFOUND N.A. YES N.A. deletions
MutationTaster2021 One sample in VCF file N.A. YES noncoding variants, short insertions and deletions (<40 bp), frameshift, premature stop codons
a

Note: Software avail: Software availability; Webserver avail: Webserver availability; YES: the corresponding tool has software or Web server; N.A., not applicable; N.M., not mentioned.