Table 2. Max Data Upload, Software, Web Server, and Variation Types of Ten Coding Frameshift Small Indels Predictors.
| tool | max data uploada | software availa | webserver availa | type of variations |
|---|---|---|---|---|
| PROVEAN | web-based version has been retired | YES | NO | SNV, insertions and deletions (<6AA) |
| SIFT Indel | <100 raw | YES | YES | Insertions and deletions (<5 bp) |
| CADD | <2 MB | YES | YES | SNV, insertions and deletions (<50 bp) |
| DDIG-IN | Multiple Variations | NO | YES | NFS/FS indels, nonsense, nonymous |
| VEST-Indel | 100–1000000 variations | NO | YES | In-frame, frameshift |
| MutPred-LOF | <100 variations | YES | YES | Frameshift stop-loss |
| PredCID | <500 indels | YES | YES | Insertions and deletions |
| SPD_Pred | N.M. | NO | YES | Single point deletions |
| PROFOUND | N.A. | YES | N.A. | deletions |
| MutationTaster2021 | One sample in VCF file | N.A. | YES | noncoding variants, short insertions and deletions (<40 bp), frameshift, premature stop codons |
Note: Software avail: Software availability; Webserver avail: Webserver availability; YES: the corresponding tool has software or Web server; N.A., not applicable; N.M., not mentioned.