Table 4.
Induced fit docking results of the active compounds inside PIM-1 kinase active site.
Code | Score (kcal/mol) | Hydrogen bonds interaction amino acids | Hydrophobic interaction amino acids | Polar interaction amino acids |
---|---|---|---|---|
Co-crystallised ligand (Figure 9) | −6.731 | One H-bond between oxygen of C═O and Lys67 (key amino acid for inhibition of PIM-1 kinase). | Leu44, Phe49, Ala65, Ile104, Leu120, Val126, Leu174, Ile185 | Gly45, Ser46, Glu89, Glu121, Arg122, Asp186 pi–H interaction between pyridone moiety and Val52 |
4c (Figure 10) | −8.18 | One H-bond between nitrogen of CN and Lys67*. | Leu44, Phe49, Ala65, Ile104, Leu120, Val126, Ile185. |
Gly45, Ser46, Gly47, Gly50, Ser51, Glu121, Arg122, Lys169, Glu171, Asn172, Asp128, Asp186 Three pi–H interactions: two pi–H interactions between pyridone moiety and Val52 and one pi–H interaction between phenolic moiety and Leu174. |
4f (Figure 11) | −8.197 | No H-bond. | Leu44, Phe49, Val52, Ala65, Ile104, Leu120, Val126, Phe130, Ile185. |
Gly45, Ser46, Gly47, Gly50, Ser51, Lys67, Glu89, Arg122, Asp131, Glu171, Asn172, Asp128, Asp186 One pi–H interaction between phenolic moiety and Leu174. |
*Amino acids interacted with the co-crystallised ligand were marketed in bold format and the key residue Lys67 was highlighted.