Skip to main content
. 2024 Jan 17;39(1):2304044. doi: 10.1080/14756366.2024.2304044

Table 4.

Induced fit docking results of the active compounds inside PIM-1 kinase active site.

Code Score (kcal/mol) Hydrogen bonds interaction amino acids Hydrophobic interaction amino acids Polar interaction amino acids
Co-crystallised ligand (Figure 9) −6.731 One H-bond between oxygen of C═O and Lys67 (key amino acid for inhibition of PIM-1 kinase). Leu44, Phe49, Ala65, Ile104, Leu120, Val126, Leu174, Ile185 Gly45, Ser46, Glu89, Glu121, Arg122, Asp186
pi–H interaction between pyridone moiety and Val52
4c (Figure 10) −8.18 One H-bond between nitrogen of CN and Lys67*. Leu44, Phe49, Ala65, Ile104, Leu120, Val126, Ile185. Gly45, Ser46, Gly47, Gly50, Ser51, Glu121, Arg122, Lys169, Glu171, Asn172, Asp128, Asp186
Three pi–H interactions: two pi–H interactions between pyridone moiety and Val52 and one pi–H interaction between phenolic moiety and Leu174.
4f (Figure 11) −8.197 No H-bond. Leu44, Phe49, Val52, Ala65, Ile104, Leu120, Val126, Phe130, Ile185. Gly45, Ser46, Gly47, Gly50, Ser51, Lys67, Glu89, Arg122, Asp131, Glu171, Asn172, Asp128, Asp186
One pi–H interaction between phenolic moiety and Leu174.

*Amino acids interacted with the co-crystallised ligand were marketed in bold format and the key residue Lys67 was highlighted.