| AD | Alzheimer’s disease |
| ADHD | Attention-deficit-hyperactive disorder |
| AEA | Cannabinoid anandamide |
| AHLs | N-acyl-homoserine lactones |
| APC | Antigen presenting cell |
| ASD | Autism spectrum disorder |
| BBB | Blood brain barrier |
| BDNF | Brain derived neurotrophic factor |
| CC | Colonocytes |
| CGRP | Calcitonin gene-related peptide |
| CLRs | C-type lectin receptors |
| CNS | Central nervous system |
| DA | Dopamine |
| DRG | Dorsal root ganglia |
| EC | Enterocyte in the Glossary |
| FMT | Fecal microbiota transplantation |
| GC | Goblet cell |
| GF | Germ-free |
| GI | Gastrointestinal |
| 5-HIAA | 5-Hydroxy indole acetic acid |
| 5-HT | Serotonin |
| IAAld | Indole-3-acetaldehyde |
| IBD | Inflammatory bowel disease |
| IEC | Intestinal epithelial cell |
| IEt | Indole-3-ethanol |
| ILA | Indole-3-lactic acid |
| IL | Interleukin |
| LPS | Lipopolysaccharides |
| KYN | Kynurenine |
| KYNA | Kynurenic acid |
| MAMPs | Microbe- associated molecular patterns |
| MDD | Major depressive disorder |
| MC | Microfold cell |
| NLRs | NOD-like receptors |
| NOD | Nucleotide-binding, and oligomerization domain |
| NTS | Nucleus tractus solitarii |
| PAMPs | Pathogen-associated molecular patterns |
| PANs | Primary afferent neurons |
| PC | Paneth cell |
| PD | Parkinson’s disease |
| PRRs | Pattern recognition receptors |
| QSM | Quorum sensing molecules |
| RIG-1 | Retinoic acid inducible gene 1 |
| RLRs | RIG-1-like receptors |
| SCFAs | Short chain fatty acids; |
| SZ | Schizophrenia |
| TBI | Traumatic brain injury |
| TC | Tuft cell |
| TL | Thoracolumbar |
| TLRs | Toll-like receptors |
| TNF-α | Tumor necrosis factor- α |
| TRP | Transient receptor potential |
| XA | Xanthurenic acid |