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. 2005 Mar 22;6:43. doi: 10.1186/1471-2164-6-43

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Copyright © 2005 Rensing et al; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Trinucleotide frequencies and codon usage. a) The averaged Physcomitrella codon fraction usage measured as percentage of the total amount of counted codons is shown as grey diamonds, including a margin of 2× average absolute deviation (AAD, error bars), in comparison with Arabidopsis (yellow circles). Significantly deviating codons of the sequence subsets are presented as colored circles, namely retained genes (blue), paralogs (red) and orthologs (green). b) The effective number of codons (enc) for Physcomitrella (green) and Arabidopsis (yellow) as a range distribution scatter plot (y axis: % of analysed genes) and as averaged values (horizontal bar chart; error bars: standard deviation).