Table 2.
Functional annotation of retained genes into broad functional categories, assembled transcripts can be retrieved via http://www.cosmoss.org.
| Pp transcript (putative retained gene) | taxonomic group | homolog | broad functional category (potential) | functional category | details |
| PPP_2925_C1 | bacteria | Membrane-bound lytic murein transglycosylase B | cytotoxicity | murein degradation | murein-degrading enzyme, may play a role in recycling of muropeptides during cell |
| BJ203770 | bacteria | putative protease | cytotoxicity | protease | |
| PPP_4234_C1 | metazoa | cytolysin I | cytotoxicity | cytotoxicity | involved in pore-formation |
| PPP_3510_C1 | cyano | RTX toxins and related Ca2+-binding proteins | cytotoxicity | cytotoxicity | |
| PPP_1172_C1 | bacteria | Enoyl-CoA hydratase/carnithine racemase | metabolism | fatty acid metabolism | |
| PPP_6629_C1 | bacteria | mannosylglycerate synthase | metabolism | sugar metabolism | |
| PPP_5746_C1 | metazoa | L-kynurenine 3-monooxygenase Fpk | metabolism | amino acid metabolism | |
| PPP_8479_C1 | metazoa | COMMD2 | metabolism | copper metabolism | COMM (copper metabolism MURR1) domain containing 2 |
| BJ173412 | metazoa | ubiquitin | metabolism | protein metabolism | ribosomal protein in C. elegans dehydrogenases |
| PPP_3987_C1 | fungi | MNN9 | metabolism | N-glycosylation | |
| PPP_6514_C1 | cyano | oxidoreductase | metabolism | energy metabolism | related to aryl-alcohol dehydrogenases |
| PPP_11394_C1 | bacteria | homolog of eukaryotic DNA ligase III | nucleic acid binding / modification | DNA repair | |
| BJ191550 | bacteria | formamidopyrimidine-DNA glycosylase | nucleic acid binding / modification | DNA repair | |
| BJ160862 | metazoa | Osa1 nuclear protein | nucleic acid binding / modification | DNA binding | chromatin regulation |
| BJ582496 | cyano | SAM-dependent methyltransferase | nucleic acid binding / modification | nucleic acid modification | |
| PPP_2586_C1 | bacteria | CarD protein | signal transduction | DNA binding | leucine zipper transcription factor, light- and starvation-induced response |
| PPP_3689_C1 | bacteria | serine/threonine protein kinase | signal transduction | signal transduction | |
| BJ172132 | bacteria | serine/threonine protein kinase | signal transduction | signal transduction | |
| PPP_460_C1 | metazoa | HLA-B-associated transcript | signal transduction | signal transduction | |
| PPP_1041_C1 | metazoa | calcium/calmodulin-dependent protein kinase II delta | signal transduction | signal transduction | |
| PPP_6326_C1 | metazoa | tumor suppressor tout-velu | signal transduction | signal transduction | involved in diffusion of hedgehog |
| PPP_11399_C1 | metazoa | dual-specificity tyrosine phosphatase YVH1 | signal transduction | signal transduction | Non-receptor class dual specificity subfamily |
| PPP_184_C1 | fungi | high-affinity iron permease | transport | transport | high affinity iron uptake |
| PPP_7115_C2 | fungi | uric acid-xanthine permease | transport | transport | belongs to the Xanthine/Uracil oermeases family |
| PPP_11191_C1 | fungi | inorganic phosphate transporter | transport | transport | probable inorganic phosphate transporter; yeast pho99 homologue |