Table 5.
Haplotype frequency and test statistics between cases and controls using htSNPs.
| Haplotypes from htSNPsa | Represented haplotypes from 10 SNPsa | Patient (frequency) | Normal | Fisher's Exact Test (P value)b | ORa,c | 95% CIc |
| TAG |
TAGTAAGACA TAGTAAGATA |
0.365 | 0.369 | 1.000 | 0.983 | 0.66–1.47 |
| TGC |
TAGAGACCTG TAGTGACCTG TAGTGACATG |
0.185 | 0.169 | 0.699 | 1.109 | 0.66–1.85 |
| GGC |
GGTTGCCCTA GGGAGACCCA GGTTGCCCTG GGTAGACCCA |
0.155 | 0.102 | 0.137 | 1.616 | 0.89–2.92 |
| TAC |
TAGTAACACA TAGTAACCTG |
0.030 | 0.039 | 0.787 | 0.765 | 0.26–2.25 |
| TGG | TAGCGCGACA | 0.025 | 0.015 | 0.498 | 1.735 | 0.41–7.36 |
| Others | 0.240 | 0.306 | 0.149 | 0.717 | 0.46–1.11 | |
| Total | 0.446 |
a. SNPs in bold and dark color are htSNPs selected from common haplotypes using the SNPtagger program.
b. Chi-square, Fisher's Exact Test and Odds Ratio were calculated by using the SAS program.
c. OR: odds Ratio; CI: confidence Interval.