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Definition of FD and PD multiple alignments: DNA-binding domains of proteins 1JHG and 1LMB from set1 are shown. Structures: the HTH motifs are highlighted in red. Multiple sequence alignments: all the shown alignments correspond to families Pfam seed alignments. The solid-lined boxes set the edges of multiple sequence alignments corresponding to the HTH sequences as found in the family templates 1JHG and 1LMB (red sequence).
