. 2005 Apr 14;33(7):2129–2140. doi: 10.1093/nar/gki349

Table 3.

HTH cross-hits

HMM rep	Len	FD-lib^a	FP_FD-lib^a	PD-lib^a	FP_PD-lib^a	N_Seqs^a	FD_max^a	PD_max^a	Δ_max
1BM8	833	0	0	0	0	6	161	27	134
1SMT	122	3	0	2	0	42	108	28	80
1B9M	262	0	0	0	0	14	104	25	79
1BL0	129	0	0	1	1	45	90	26	64
1JHG	107	0	0	0	0	5	88	28	60
1FSE	74	1	0	2	1	30	73	32	41
1LMB	236	10	2	7	2	194	66	27	39
2DTR	226	3	2	2	0	10	62	29	33
1B72	430	0	0	0	0	182	60	33	27
1HLV	599	6	0	4	0	8	55	21	34
1HCR	190	4	2	4	0	14	54	22	32
2TCT	217	8	0	5	0	117	49	23	26
1HW5	210	3	0	3	1	12	34	29	5
1QPZ	340	5	1	6	0	27	34	24	10
Total		43	7	36	5

^aLen, protein sequence length; FD-lib, number of its detected from the corresponding FD–HMM; PD-lib, number of hits detected from the corresponding PD–HMM; FP_FD-lib, number of FP detected from the corresponding FD–HMM; FP_PD-lib, number of FP detected from the corresponding PD–HMM; N_seq, number of sequences in the Pfam multiple alignment; FD_max, maximum sequence length in the FD multiple alignment; and PD_max, maximum sequence length in the PD multiple alignment.