Table 5.
Comparison of masked regions
| Repeat family | Total | Found |
|---|---|---|
| SINE/Alu | 919 | 893 |
| Low complexity | 77 | 17 |
| Simple repeat | 59 | 12 |
| SINE/MIR | 53 | 0 |
| LINE/L2 | 34 | 3 |
| LINE/L1 | 34 | 1 |
| DNA/MER1 type | 23 | 2 |
| LTR/MaLR | 17 | 1 |
| DNA/MER2 type | 14 | 1 |
| LTR/ERV1 | 10 | 0 |
| Other | 24 | 0 |
| Sum | 1264 | 930 |
The second column shows how many regions of the given type that were identified by RepeatMasker, and the third column shows how many of these were found by RepeatBeater. A region counts as found if there is at least a partial overlap with a RepeatBeater masked region.