Table 2.
CAM species with publicly available whole-genome sequences and associated assembly statistics; BUSCO, benchmarking universal single-copy orthologue (Manni et al., 2021).
| Taxon1 | CAM type2 | Genome size | Scaffold N50 | Scaffold L50 | Complete Embryophyta BUSCOs (%) |
|---|---|---|---|---|---|
|
Isoëtaceae
Isoëtes taiwanensis De Vol (Wickell et al., 2021) |
Aquatic strong CAM | 1.65 Gb | 17.4 Mb | Not reported | 94.53 |
|
Asphodelaceae
Aloe vera (L.) Burm.F. (Jaiswal et al., 2021) |
Strong CAM (Winter and Holtum, 2002) | 12.93 Gb | 14.6 kb | Not reported | 74.6 |
|
Orchidaceeae
Cymbidium crassifolium Herb. (Fan et al., 2023; reported as Cymbidium mannii Rchb.f.) |
Strong CAM | 2.88 Gb | 22.7 Mb | Not reported | 97.0 |
| Dendrobium nobile Lindl. (Xu et al., 2022) | C3 + CAM (Qiu et al., 2015) | 1.16 Gb | 64.5 Mb | 8 | 96.2 |
| Dendrobium officinale Kimura & Migo (Yan et al., 2015) | C3 + CAM (Zou et al., 2018; reported as D. catenum Lindl.) | 1.35 Gb | 76.5 kb | 4697 | Not reported |
| Dendrobium chrysotoxum Lindl. (Zhang et al., 2021) | C3 + CAM (Qiu et al., 2015) | 1.37 Gb | 67.8 Mb | 8 | 90.3 |
| Phalaenopsis equestris (Schauer) Rchb.f. (Cai et al., 2015) | Strong CAM (Zhang et al., 2016) | 1.16 Gb | 359 kb | 523 | Not reported |
| Vanilla planifolia Andrews (Hasing et al., 2020) | Strong CAM (Silvera et al., 2010a) | 1.48 Gb | 42.0 Mb | 13 | 93.9 |
|
Bromeliaceae
Aechmea fasciata (Lindl.) Baker (Li et al., 2022) |
Strong CAM (Crayn et al., 2015) | 359 Mb | 4.68 Mb | 38 | 93.4 |
| Ananas comosus (L.) Merr. V3 (Ming et al., 2015) | Strong CAM | 526 Mb | 11.8 Mb | 13 | 89.3 |
|
Crassulaceae
Kalanchoë fedtschenkoi Raym.-Hamet & H.Perrier v1.1 (Yang et al., 2017) |
Strong CAM | 256.35 Mb | 2.5 Mb | 28 | 89.5 |
| Kalanchoë laxiflora Baker v3.1 (Yang et al., 2017) | Strong CAM | 262 Mb | 12.5 Mb | 8 | 93.2 |
| Sedum album L. (Wai et al., 2019) | C3 + CAM | 302 Mb | 93 kb | 868 | 97 |
|
Vitaceae
Cissus rotundifolia Vahl (Xin et al., 2022) |
Strong CAM (Nelson and Sage, 2008) | 350.69 Mb | 27.6 Mb | 5 | 92.4 |
|
Euphorbiaceae
Jatropha curcas L. (Ha et al., 2019) |
C3 + CAM (Winter and Holtum, 2015) | 414 Mb | 1.5 Mb | Not reported | 82.5 |
|
Aizoaceae
Mesembryanthemum crystallinum L. (Shen et al., 2022) |
Facultative CAM | 377.97 Mb | 40.5 Mb | 5 | 98.0 |
|
Cactaceae
Carnegiea gigantea (Engelm.) Britton & Rose (Copetti et al., 2017) |
Strong CAM (Nobel and Hartsock, 1986) | 1.30 Gb | 61.5 kb | 4575 | 91 |
| Lophocereus schottii (Engelm.) Britton & Rose (Copetti et al., 2017) | Strong CAM (Mooney et al., 1974) | 1.47 Gb | 9.3 kb | 21 671 | 74 |
| Pachycereus pringlei (S.Watson) Britton & Rose (Copetti et al., 2017) | Strong CAM (Mooney et al., 1974) | 1.41 Gb | 5.4 kb | 32 562 | 61 |
| Pereskia horrida DC. (Copetti et al., 2017; reported as P. humboltii Britton & Rose) | C3 + CAM (Martin and Wallace, 2000) | 980 Mb | 4.4 kb | 28 266 | 52 |
| Stenocereus thurberi (Engelm.) Buxb. (Copetti et al., 2017) | Strong CAM (Huber et al., 2018) | 1.42 Gb | 10.5 kb | 20 352 | 71 |
| Selenicereus undatus (Haw.) D.R.Hunt (reported as Hylocereus undatus (Haw.) D.R.Hunt) (Chen et al., 2021) | Strong CAM (Wang et al., 2019b) | 1.41 Gb | 127.2 Mb | 670 | 93.83 |
|
Portulacaceae
Portulaca amilis Speg. (Gilman et al., 2022) |
C4 + CAM | 403.89 Mb | 42.6 Mb | 5 | 96.9 |
| Portulaca oleracea L. (Wang et al., 2023) | C4 + CAM | 1.13 Gb | 35.1 Mb | 11 | 98.0 |
1Genome assembly version 1.0 unless otherwise noted.
2Evidence of CAM is provided under the Taxon column unless provided here.
3Eukaryota BUSCOs were used to benchmark Isoëtes taiwanensis (Wickell et al., 2021) and Hylocereus undatus (Chen et al., 2021).