Table 1.
Protein |
Function |
Length[a] |
Res. [Å] |
Space group |
PDB accession |
Structural insights |
Ref. |
|
---|---|---|---|---|---|---|---|---|
Lacticin Q |
Bacteriocin |
53 |
0.96 |
P1 |
7P5R |
First reported crystal structure |
[31] |
|
CyO2 |
Bracelet cyclotide |
30 |
1.17 |
P1211 |
7RMQ |
First reported crystal structures of bracelet cyclotides |
[32] |
|
CyO2 (I11L) |
1.04 |
P1211 |
7RMR |
|||||
CyO2 (I11G) |
1.10 |
P1211 |
7RMS |
|||||
Hyen D |
1.35 |
P1211 |
7RIH |
|||||
Hyen D (I11L) |
1.22 |
P
|
7RII |
|||||
Hyen D (I11G) |
1.30 |
P1 |
7RIJ |
|||||
Calcicludine |
Kunitz‐type serine protease inhibitor homolog |
60 |
2.52 |
I41 |
6KZF |
Confirmation of novel disulfide surrogate bridge strategy (DADA) |
[33] |
|
rC5a‐desArg |
Rat anaphylatoxin |
76 |
1.80 |
P1 |
[g] |
New insights on C‐terminal conformation |
[34] |
|
Chimeric‐rC5a |
77 |
1.31 |
P212121 |
g |
Chimeric protein probes conjugated to small‐molecule antagonist |
[35] |
||
rC5a |
1.58 |
P
|
g |
|||||
M2‐TM[b] |
Ion channel TM helix |
24 |
2.00 |
P21 /c |
4RWB |
Investigations of a heterochiral coiled coil |
[27b] |
|
M2‐TM[c] |
1.05 |
P
|
4RWC |
|||||
M2‐TM (I39A)[c] |
1.55 |
P
|
6MPL |
[27a] |
||||
M2‐TM (I42A)[c] |
1.40 |
P
|
6MPM |
|||||
M2‐TM (I42E)[c] |
1.40 |
P
|
6MPN |
|||||
Melittin |
Honeybee venom |
27 |
1.27 |
C2 |
6O4M |
Retention of native quaternary structure |
[36] |
|
Ribifolin |
Orbitides from Jatropha |
8 |
0.99 |
P121/n1 |
6DKZ |
Unveil structures of Jatropha orbitides |
[37] |
|
Pohlianin C |
8 |
1.20 |
Pcab |
6LD0 |
||||
Jatrophidin |
8 |
1.03 |
P121/n1 |
6DL1 |
||||
GsMTx4 |
Spider venom |
34 |
1.75 |
P
|
g |
First reported crystal structure |
[38] |
|
BTD‐2 |
Baboon θ‐defensin |
18 |
1.45 |
P
|
5INZ |
Novel oligomeric state resembles mechanistically relevant assembly |
[39] |
|
Snakin‐1 |
Potato snakin |
63 |
1.50 |
P1 |
5E5Y |
Novel use of radiation damage induced phasing of quasi‐racemic crystals |
[40] |
|
1.60 |
P21/c |
5E5Q |
||||||
1.57 |
P21/c |
5E5T |
||||||
Ubiquitin |
Ubiquitin |
76 |
1.95 |
[d] |
[g] |
Confirm folding of synthetic protein |
[41] |
|
M1‐linked tri‐Ubs |
76[e] |
1.80 |
P1 |
5GO7 |
D‐monomeric Ub can facilitate Ub oligomer crystallization |
[28] |
||
M1‐linked tetra‐Ub |
2.18 |
P21 |
5GO8 |
|||||
K6‐linked di‐Ub |
1.15 |
P1 |
5GOB |
|||||
K11‐linked di‐Ub |
1.73 |
P1 |
5GOC |
|||||
K27‐linked di‐Ub |
1.15 |
P1 |
5GOD |
|||||
K29‐linked di‐Ub |
1.98 |
P2 |
5GOG |
|||||
K33‐linked di‐Ub |
1.95 |
P1 |
5GOH |
|||||
K48‐linked di‐Ub |
1.59 |
P1 |
5GOI |
|||||
K63‐linked di‐Ub |
1.55 |
P21212 |
5GOJ |
|||||
K11/K63‐linked tri‐Ub |
1.84 |
P22121 |
5GOK |
|||||
K27‐linked di‐Ub |
152 |
1.55 |
C2 |
5J8P |
Largest true synthetic racemic proteins to be crystallized |
[42] |
||
K27‐linked tri‐Ub |
228 |
2.10 |
H3 |
5JBV |
||||
VHP |
Vinillin headpiece domain |
35 |
2.10 |
P
|
3TRW |
Investigation of pentafluoro phenylalanine (F5Phe) amino acids on protein structure |
[43] |
|
VHP |
2.30 |
I‐4c2 |
3TRY |
|||||
VHP (F5Phe10) |
1.46 |
F222 |
3TJW |
|||||
VHP (F5Phe17) |
1.00 |
P1 |
3TRV |
|||||
VHP (β3‐hGln26) |
1.30 |
P1 |
5I1N |
Investigation of beta amino acids on protein structure |
[44] |
|||
VHP (ACPC26) |
1.35 |
P1 |
5I1O |
|||||
VHP (β3‐hLys30) |
1.40 |
P1 |
[g] |
|||||
VHP (APC30) |
1.12 |
P1 |
5I1S |
|||||
Ts3 |
Scorpion venom |
64 |
1.93 |
P
|
5CY0 |
First reported structure of Ts3 |
[45] |
|
Magainin 2 (L‐1) |
Amphibian HDP |
23 |
1.75 |
I‐42d |
4MGP |
Beta amino acid variants investigating phenylalanine zipper motif |
[46] |
|
Magainin 2 (L‐2) |
2.20 |
P21212 |
5CGN |
[47] |
||||
Magainin 2 (L‐3) |
1.50 |
P1 |
5CGO |
|||||
ShK |
Sea anemone venom |
35 |
0.97 |
P121/c |
4LFS |
Structure variation to NMR and enantiospecific activity |
[48] |
|
ShK analogue |
1.20 |
H‐3 |
4Z7P |
Structure activity relationships |
[49] |
|||
ShK (allo‐Thr13) |
0.90 |
P1 |
5I5B |
Investigation of side chain chirality on protein structure |
[50] |
|||
ShK (allo‐Thr31) |
1.30 |
P1211 |
5I5C |
|||||
ShK (allo‐Ile7) |
1.20 |
C2 |
5I5A |
|||||
Rv1738 |
M. tuberculosis protein |
94 |
1.50 |
C12/c1 |
4WPY |
First reported structure, unknown function |
[51] |
|
STFI‐1 |
Sunflower trypsin inhibitor |
14 |
1.25 |
P
|
4TTK |
Disulfide‐rich scaffolds for drug design |
[52] |
|
cVc1.1 |
Cone snail venom |
22 |
1.70 |
Pbca |
4TTL |
|||
kB1 |
Plant cyclotide |
29 |
1.90 |
P
|
4TTM |
|||
kB1 (G6A) |
1.25 |
P
|
4TTN |
|||||
kB1(V25A) |
2.30 |
P
|
4TTO |
|||||
Ser‐CCL1 |
Chemokine |
73 |
2.15 |
P1 |
4OIJ |
Crystal structure of a homogenous, glycosylated chemokine |
[53] |
|
Glycosylated Ser‐CCL1 |
73[f] |
2.10 |
P1 |
4OIK |
||||
DKP Ester Insulin |
Synthetic hormone+derivatives |
51 |
1.60 |
P
|
4IUZ |
Confirm folding of synthetic derivative |
[54] |
|
Ester insulin |
1.50 |
I213 |
5EN9 |
Confirmation of correctly folded synthetic protein for isotope experiments |
[55] |
|||
Human insulin |
1.35 |
I213 |
5ENA |
|||||
VEGF‐A/antagonist complex |
Vascular endothelial growth factor A+D‐protein binder |
102+56 |
1.60 |
P21/n |
4GLN |
First reported structure of a heterochiral protein complex by racemic crystallography |
[56] |
|
Crambin analogue |
Thionin protein |
46 |
1.08 |
P1211 |
3UE7 |
Novel linear‐loop peptide chain topology |
[29a] |
|
Kaliotoxin |
Scorpion venom |
38 |
0.95 |
P
|
3ODV |
Basis for structure activity relationships |
[57] |
|
Omwaprin |
Snake venom |
50 |
1.30 |
P21/c |
3NGG |
First reported structure |
[30] |
[a] Total amino acid length of synthetic protein enantiomer. [b] Crystallized from monoolein lipidic cubic phase. [c] Crystallized from racemic lipids. [d] Data unavailable. [e] Residues in D‐protein enantiomer. [f] 73 residues+oligosaccharide. [g] Not reported/deposited.