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. 2024 Jan 24;25:108. doi: 10.1186/s12864-024-09982-w

Table 1.

Structure of the complete cp genomes of sect. Tuberculata plants

C.
rhytidophylla
C.
acutiperulata
C.
rhytidocarpa
C.
lipingensis
C.
pyxidiacea
C.
rubimuricata
C.
neriifolia
C.
atuberculata
C.
ilicifolia
C.
zengii
C.
anlungensis
C.
rubituberculata
C.
leyeensis
Genome size (bp) 156,625 156,624 157,048 157,011 156,677 156,631 157,067 157,068 157,067 157,029 156,587 157,044 157,063
GC (%) 37.34 37.33 37.31 37.30 37.33 37.33 37.30 37.31 37.31 37.31 37.33 37.31 37.30
LSC size (bp) 86,227 86,212 86,648 86,732 86,261 86,237 86,675 86,675 86,674 86,630 86,262 86,689 86,661
SSC size (bp) 18,282 18,282 18,282 18,281 18,286 18,276 18,282 18,283 18,283 18,281 18,339 18,279 18,284
IR size (bp) 52,116 52,130 52,118 51,998 52,130 52,118 52,110 52,110 52,110 52,118 51,986 52,076 52,118
GC of LSC (%) 35.37 35.36 35.33 35.32 35.35 35.37 35.31 35.31 35.31 35.33 35.31 35.31 35.31
GC of SSC (%) 30.60 30.59 30.62 30.63 30.62 30.59 30.61 30.61 30.61 30.62 30.60 30.62 30.60
GC of IR (%) 42.95 42.95 42.95 42.96 42.95 42.94 42.96 42.97 42.97 42.95 42.96 42.98 42.96
GC of CDSs (%) 37.55 37.61 37.54 37.53 37.53 37.52 37.61 37.61 37.61 37.61 37.54 37.65 37.55
1st position GC (%) 45.26 45.37 45.23 45.23 45.19 45.34 45.37 45.37 45.37 45.34 45.24 45.42 45.26
2nd position GC (%) 37.97 38.04 37.98 37.94 37.94 37.94 38.04 38.03 38.04 38.04 37.97 38.00 37.97
3rd position GC (%) 29.40 29.43 29.40 29.42 29.43 29.43 29.46 29.43 29.43 29.46 29.40 29.53 29.40
Length of CDSs 79,487 79,500 79,659 79,753 79,767 79,925 79,099 79,161 79,160 79,395 79,671 80,155 80,175
Number of genes 130 130 130 132 132 132 132 132 132 133 134 136 136
Number of CDSs 87 87 87 87 87 87 87 87 87 88 89 91 91
Number of tRNAs 35 35 35 37 37 37 37 37 37 37 37 37 37
Number of rRNAs 8 8 8 8 8 8 8 8 8 8 8 8 8
Genome type I I I II II II II II II III IV In In