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. 2024 Jan 6;9(3):3642–3668. doi: 10.1021/acsomega.3c07655

Table 8. Prime MMGBSA Binding Energy (kcal/mol) Estimations for Compounds with the Voltage-Dependent L-type Calcium Channel Alpha-1C Subunit (CAC1C_ HUMAN)a.

                        ligand-residue interactions with distance (Å)
sr. no. compound docking score ΔGbinding glide energy log Ki (μM) ΔGsolv GB ΔGHbond ΔGvdW ΔGcoulomb ΔGlipophilic ΔGcovalent hydrogen bond electrostatic/ hydrophobic
1 (methylsulfanyl) butyl glucosinolate −6.93 −41.93 −46.79 −14.98 22.75 −4.10 −37.55 −16.54 −9.05 2.56 salt bridge: LYS676 (2.23); conventional hydrogen bond: TYR144 (2.13), TYR144 (2.51), GLN671 (2.34), ASP150 (1.80), PHE147 (1.97) attractive charge: LYS676 (2.23); alkyl: PRO146 (5.37)
2 epsilon-viniferin −5.13 −40.01 −53.47 −14.15 40.63 −3.08 −36.93 −34.94 −12.19 8.59 conventional hydrogen bond: GLU149 (1.59), GLN671 (1.65), PRO148 (1.92), ASN156 (1.80); carbon hydrogen bond: GLY674 (2.45) pi-cation: LYS676 (4.29); pi-anion: GLU149 (3.84); pi-pi stacked: TYR144 (5.44); pi-alkyl: LYS234 (4.20)
3 eugenol −5.12 −30.79 −22.58 −10.14 10.31 −0.55 −19.94 −6.20 −19.46 6.11 conventional hydrogen bond: TYR144 (1.59); carbon hydrogen bond: GLN671 (2.93), GLN671 (2.79) pi-pi T-shaped: TYR144 (4.82); alkyl: LEU141 (3.83), ARG240 (4.48), VAL241 (4.45); pi-alkyl: TYR144 (5.18), MET670 (4.27)
4 scoparone −4.87 −33.21 −25.93 −11.20 12.36 −0.67 −27.89 −4.38 −11.65 0.75 conventional hydrogen bond: ASP150 (1.91); carbon hydrogen bond: ASP150 (2.97), GLY674 (2.61), MET670 (2.55), GLN671 (2.97), PHE673 (2.47), PHE673 (2.84); pi-donor hydrogen bond: PHE147 (2.92) alkyl: PRO146 (4.43), MET670 (4.57); pi-alkyl: TYR144 (5.30), PRO146 (5.27)
5 sinapic acid −4.77 −12.86 −22.70 −2.36 5.19 −2.23 −23.53 12.35 −7.45 3.21 salt bridge: ARG237 (1.81), ARG237 (3.17); conventional hydrogen bond: ASP150 (1.88); carbon hydrogen bond: GLU149 (2.98), ASP150 (2.40), ASP151 (2.40) attractive charge: ARG237 (1.81), ARG237 (3.17), ARG240 (5.30); pi-anion: ASP150 (3.54); alkyl: LYS234 (4.47); Pi-alkyl: PHE147 (4.66)
6 2-coumaric acid −4.01 −14.20 −14.61 −2.94 −5.19 −1.56 −14.72 18.22 −12.94 3.74 conventional hydrogen bond: TYR144 (1.87), GLN671 (2.21), GLN671 (1.85); carbon hydrogen bond: ARG237 (2.87) attractive charge: ARG240 (5.52); pi-sulfur: MET670 (5.40)
7 dehydrosalsolidine −4.01 −30.50 −28.29 −10.02 15.30 −1.14 −25.55 −11.31 −9.65 1.89 conventional hydrogen bond: ASP150 (2.22), GLN671 (1.94); carbon hydrogen bond: ASN156 (2.68), ASP150 (2.59), GLU149 (2.56) alkyl: PRO146 (5.34); pi-alkyl: PHE147 (5.22)
8 verapamil −3.84 −37.17 −45.42 −12.91 35.19 −1.50 −40.25 −19.05 −14.41 3.89 salt bridge: GLU149 (1.76); conventional hydrogen bond: PHE147 (2.14), PHE147 (2.83); carbon hydrogen bond: PRO146 (2.74), GLU149 (2.26), PHE147 (2.63), ILE145 (2.46), ASN156 (2.57), ASN156 (2.63) attractive charge: GLU149 (1.76), ASP150 (5.51); pi-cation: LYS676 (4.37); pi-pi T-shaped: TYR719 (5.73); alkyl: LEU728 (5.24), VAL729 (4.83), PRO146 (4.92); pi-alkyl: TYR144 (4.17), TYR719 (4.73)
a

ΔG Binding: binding free energy; pKi: logarithmic of inhibition constant Ki; ΔG bind solv GB: generalized born electrostatic solvation energy; ΔG bind H bond: hydrogen bonding energy; ΔG bind vdW: van der Waals forces energy; ΔG bind coulomb: coulomb binding energy; ΔG bind lipophilic: lipophilic binding energy; ΔG bind covalent: covalent binding energy; These energies all contribute to ΔG binding, the free energy of binding.