TABLE 1.
Speciesa,b | Strainb | plcR gene fragment sequenced | Avg threshold cyclee | TaqMan result (allele) |
---|---|---|---|---|
BA | 89 diverse strainsc | 2 | 26.0f | + (T) |
BC | ATCC 4342 | NA | No Amp | − |
BC | ATCC 14579 | NA | No Amp | − |
BC | D17 | 7 | No Amp | − (G)g |
BC | F3-27 | NA | No Amp | − |
BC | F3502/72 | 8 | 27.1 | + (G) |
BC | R6 | 8 | 27.6 | + (G) |
BC | ATCC 33018 | 10 | 38.5 | + (G) |
BC | D5 | NA | 28.4 | + (G) |
BC | 3A | 3 | 24.8 | + (G) |
BC | S2-8 | 3 | 27.0 | + (G) |
BC | F3350/87 | NA | No Amp | − |
BC | S2-4 | NA | 34.9 | + (G) |
BC | R4 | 10 | 34.7 | + (G) |
BC | F2-1 | 9 | No Amp | − (G)g |
BC | AH 527 | 6 | 30.0 | + (G) |
BT | HD 1015 | NA | No Amp | − |
BT | HD 681 | NA | No Amp | − |
BT | HD 288 | NA | No Amp | − |
BT | HD 526 | NA | No Amp | − |
BT | 97-27 | 4 | 33.0 | + (G) |
BT | HD 1011 | 3 | 26.7 | + (G) |
BT | HD 571 | 7 | No Amp | − (G)g |
BT | HD 682 | 7 | No Amp | − (G)g |
BT | HD 974 | NA | No Amp | − |
BT | HD 44 | 7 | No Amp | − (G)g |
BT | HD 30 | NA | No Amp | − |
BT | HD 1012 | 10 | 33.0 | + (G) |
BT | HD 50 | NA | No Amp | − |
UNK | TET-2B | 5 | 33.3 | + (G) |
BA, B. anthracis; BC, B. cereus; BT, B. thuringiensis; UNK, unknown Bacillus spp.
Species and strain designations according to reference 4.
The 89 diverse B. anthracis strains are described in reference 6.
As represented in Fig 1. NA, strain not sequenced.
Input, 10 pg, average of triplicate cycle threshold values. No Amp, no amplification.
Average of triplicate cycle threshold values from 10-pg input of B. anthracis Ames strain.
plcR genotypes (Fig. 1) were determined via sequencing using flanking primers.