Table 1.
Genomic and phenotypic features of a community-associated methicillin-resistant Staphylococcus aureus (CA-MRSA) ST1 strain associated with subclinical caprine mastitis in Northeastern Brazil.
| Features | S. aureus Strain 31 |
|---|---|
| Phenotypic antibiotic resistance profile | FOX, OXA, PEN, TET |
| Structural Genomic data | |
| Genome size (bp) | 2,792,445 |
| Contigs number | 9 |
| CDSs | 2614 |
| rRNA | 4 |
| tRNA | 57 |
| % GC | 32.69 |
| Epidemiological Genomic Data | |
| MLST (ST) 1 | ST1 |
| SPATyper 2 | t128 |
| Plasmid 3 | pSA31PB |
| ARG 4,* | blaI, blaR1, blaZ, lmrS, mecA, tet(38) |
| Virulence factors (VFDB) 5 | |
| Adherence | atl, ebh, clfA, clfB, cna, ebp, efb, fnbA, fnbB, icaA, icaB, icaC, icaR, sdrC, sdrD, sdrE, spa |
| Enzyme | sspA, sspB, sspC, hysA, geh, lip, splA, splB, splC, splF, coa, sak, nuc |
| Immune evasion | adsA, scn, sbi |
| Secretion system | esaA, esaB, esaD, esaE, esaG, essA, essB, essC, esxA, esxB, esxC, esxD |
| Toxin | hla, hld, sea, sec, seh, selk, sell, selq, set16, set17, set18, set19, set21, set22, set23, set24, set25, set26, set34, hlgA, hlgB, hlgC, lukD, lukF-PV, lukS-PV |
Legend: FOX—cefoxitin; OXA—oxacillin; PEN—penicillin; TET—tetracycline. * Antibiotic resistance genes. Available in 1 https://cge.cbs.dtu.dk/services/MLST/ (accessed on 5 September 2023), 2 https://cge.cbs.dtu.dk/services/spatyper/ (accessed on 5 September 2023), 3 https://cge.cbs.dtu.dk/services/PlasmidFinder/ (accessed on 5 September 2023); 4 https://cge.cbs.dtu.dk/services/ResFinder/ (accessed on 5 September 2023); 5 http://www.mgc.ac.cn/VFs/main.htm (accessed on 5 September 2023).