Table 2.

Tools for registering multimodality 2D microscopy images—download links (last accessed on 9 May 2023).

AIBLROI	https://imagej.net/plugins/align-image-by-line-roi
BigWarp	https://imagej.net/plugins/bigwarp
Correlia	https://www.ufz.de/index.php?en=47216
ec-CLEM	https://icy.bioimageanalysis.org/plugin/ec-CLEM/
elastix	https://en.wikipedia.org/wiki/Elastix_(image_registration)
ITK	https://itk.org/
LSAWSIFT	https://imagej.net/plugins/linear-stack-alignment-with-sift
RVSS	https://imagej.net/plugins/register-virtual-stack-slices
StackReg	http://bigwww.epfl.ch/thevenaz/stackreg/
TrakEM2	https://imagej.net/plugins/trakem2/
DS4H-IA	https://github.com/UniBoDS4H/DS4H-Image-Alignment