Table 2.
Amino-acids | Nucleotides | Exon | N (%) | ||||
---|---|---|---|---|---|---|---|
KMT2D | 82 (78%) | ||||||
PTV | 61 (74%) | ||||||
Nonsense | 40 (49%) | ||||||
Nonsense | 20 (24%) | ||||||
p.Cys247* | c.741T>A | 7 | 1 | ||||
p.Ser286* | c.855_856del | 7 | 1 | ||||
p.Gln1773* | c.5317C>T | 22 | 1 | ||||
p.Gln1949* | c.5845C>T | 27 | 1 | ||||
p.Gln2109* | c.6325C>T | 31 | 1 | ||||
p.Arg2645* | c.7933C>T | 31 | 1 | ||||
p.Arg2801* | c.8401C>T | 34 | 1 | ||||
p.Gln3910* | c.11728C>T | 39 | 1 | ||||
p.Gln3942* | c.11824C>T | 39 | 1 | ||||
p.Gln4223* | c.12667C>T | 39 | 1 | ||||
p.Gln4230* | c.12688C>T | 39 | 2 | ||||
p.Arg4484* | c.13450C>T | 39 | 1 | ||||
p.Arg4904* | c.14710C>T | 48 | 1 | ||||
p.Arg5282* | c.15844C>T | 49 | 1 | ||||
p.Tyr5321* | c.15963T>G | 50 | 1 | ||||
Frameshift | 20 (24%) | ||||||
p.Leu656Profs*12 | c.1966dup | 10 | 1 | ||||
p.Glu1224Argfs*26 | c.3669dup | 11 | 1 | ||||
p.Gly1235Valfs*95 | c.3699del | 11 | 1 | ||||
p.Met1379Valfs*52 | c.4135_4136del | 14 | 1 | ||||
p.Asp1876Glyfs*38 | c.5627_5630del | 25 | 1 | ||||
p.Ser2039Glnfs*8 | c.6115del | 29 | 2 | ||||
p.Ala2119Argfs*36 | c.6354dup | 31 | 1 | ||||
p.Pro2330Serfs*47 | c.6987_6988insT | 31 | 1 | ||||
p.Phe3672Leufs*76 | c.11016_11019del | 39 | 1 | ||||
p.Met3894Trpfs*85 | c.11679del | 39 | 1 | ||||
p.Glu4039Glyfs*17 | c.12116_12117del | 39 | 1 | ||||
p.Ser4138Cysfs*29 | c.12413_12414del | 39 | 1 | ||||
p.Leu4483Cysfs*36 | c.13446del | 39 | 1 | ||||
p.Tyr5113Leufs*25 | c.15337dup | 48 | 1 | ||||
p.Lys5139Gly | c.15415_15418del | 48 | 1 | ||||
p.Leu5318Serfs*14 | c.15953_15956del | 50 | 1 | ||||
Splice donor site | 21 (26%) | ||||||
c.674-1G>A | 1 | ||||||
c.1258+1G>A | 1 | ||||||
c.2797+1G>C | 1 | ||||||
c.13531-2A>C | 1 | ||||||
c.14516-1G>C | 1 | ||||||
PAV | 15 (18%) | ||||||
Missense | 14 (17%) | ||||||
p.Ala2182Thr | 10 | 1 | |||||
p.Glu1391Lys | c.4171G>A | 14 | 1 | ||||
p.Arg5048Cys | c.15142C>T | 48 | 1 | ||||
p.Arg5048His | c.15143G>A | 48 | 1 | ||||
p.Arg5154Gln | c.15461G>A | 48 | 2 | ||||
p.Arg5179His | c.15536G>A | 48 | 2 | ||||
p.Arg5214Cys | c.15640C>T | 48 | 1 | ||||
p.Gly5295Ala | c.15884G>C | 49 | 1 | ||||
p.Arg5340Gln | c.16019G>A | 50 | 3 | ||||
p.Arg5432Trp | c.16294C>T | 51 | 1 | ||||
Indel | 1 (1%) | ||||||
p.Val275Ser | c.822_825delinsGTAGGCT | 7 | 1 | ||||
KDM6A | 23 (22%) | ||||||
PTV | 18 (78%) | ||||||
Nonsense | 10 (43%) | ||||||
Nonsense | 7 (30%) | ||||||
p.Tyr109* | c.327_333del | 3 | 1 | ||||
p.Arg172* | c.514C>T | 6 | 1 | ||||
p.Gln692* | c.2074C>T | 17 | 1 | ||||
p.Gln1037* | c.3109C>T | 20 | 1 | ||||
p.Trp1221* | c.3663G>A | 25 | 1 | ||||
p.Arg1279* | c.3835C>T | 26 | 2 | ||||
Frameshift | 3 (13%) | ||||||
p.Gln607Alafs*25 | c.1818_1819del | 16 | 1 | ||||
p.Thr613Tyrfs*8 | c.1846_1849del | 16 | 1 | ||||
p.Ser1091Metfs*12 | c.3270_3273del | 17 | 1 | ||||
Splice donor site | 7 (30%) | ||||||
c.564+1G>T | 1 | ||||||
c.619+6T>C | 1 | ||||||
c.620-2A>G | 1 | ||||||
c.875+1G>A | 1 | ||||||
c.2939-1G>T | 1 | ||||||
c.2988+1G>C | 1 | ||||||
c.3366-8_3366-4del | 1 | ||||||
Large deletion | 1 (4%) | ||||||
exons 1 and 2 | 1 | ||||||
PAV | 2 (9%) | ||||||
Missense | 2 (9%) | ||||||
p.Arg481His | c.1442G>A | 14 | 1 | ||||
p.Arg1255Trp | c.3763C>T | 26 | 1 |
KMT2D , Lysine (K)-specific methyltransferase 2D; KDM6A, Lysine (K)-specific demethylase 6A; PTV, protein-truncating variant; PAV, protein-altering variant.