Supplementary Table S1.
Variant | Frequency1 | Reference | Pathogenicity predictions |
||
---|---|---|---|---|---|
REVEL | CADD | Rhapsody | |||
p.Val2Phe | 0.00005 | (Bal et al., 2019) | 0.15 | 25.2 | 0.16 |
p.Leu21Pro | 0.00003 | (Ellingford et al., 2016) | 0.93 | 25.8 | 0.59 |
p.Leu27Pro | 0.001 | (Marrakchi et al., 2011) | 0.60 | 24.3 | 0.67 |
p.His32Arg | - | (Körber et al., 2013) | 0.15 | 21.4 | 0.06 |
p.Lys35Arg | 0.001 | (Setta-Kaffetzi et al., 2013) | 0.42 | 23.3 | 0.39 |
p.Ile42Asn | 0.000009 | (Takeichi etal., 2017) | 0.74 | 26.4 | 0.84 |
p.Val44Met | 0.00006 | (Wang et al., 2016) | 0.17 | 18.7 | 0.32 |
p.Arg48Trp | 0.001 | (Onoufriadis et al., 2011) | 0.63 | 25.6 | 0.65 |
p.Pro76Leu | 0.005 | (Körber et al., 2013) | 0.58 | 23.0 | 0.72 |
p.Pro82Leu | 0.004 | (Li et al., 2014) | 0.03 | 22.2 | 0.13 |
p.Arg102Trp | 0.005 | (Setta-Kaffetzi et al., 2013) | 0.58 | 23.1 | 0.33 |
p.Arg102Gln | 0.000009 | (Li et al., 2013) | 0.42 | 25.1 | 0.40 |
p.Arg103Gln | 0.00009 | (Mössner et al., 2018) | 0.09 | 22.2 | 0.11 |
p.Glu112Lys | 0.00006 | (Hayashi et al., 2014) | 0.78 | 27.0 | 0.43 |
p.Ser113Leu | 0.007 | (Onoufriadis et al., 2011) | 0.32 | 22.8 | 0.62 |
p.Thr123Arg | - | (Farooq et al., 2013) | 0.62 | 23.5 | 0.69 |
p.Thr123Met | 0.0001 | (Kanazawa et al., 2013) | 0.58 | 23.4 | 0.70 |
The recurrent p.Leu27Pro and p.Ser113Leu mutations are highlighted in bold font.
Abbreviation: CADD, Combined Annotation Dependent Depletion; REVEL, Rare Exome Variant Ensemble Learner.
Maximum frequency observed across gnomAD (r2.1.1) populations.