TABLE 3.
Band(s)a | Size (bp) | Closest relative | % Identity | Sourceb |
---|---|---|---|---|
1 | 113 | Lactobacillus sakei | 99.1 | AB124845 |
2 | 91 | Staphylococcus xylosus | 98.9 | AY126259 |
3, 18, 24, 36 | 113 | Lactobacillus curvatus | 99.6 | AY204894 |
4 | 75 | Bacterium Ellin5218 | 100 | AY234569 |
5, 25, 38 | 91 | Staphylococcus sciuri or S. pulvereric | 98.9 | AY126231 or AY126216 |
6 | 91 | Staphylococcus equorum or S. succinus | 98.2 | AF527483 or AY126240 |
7, 41 | 93 | Macrococcus caseolyticus | 96.7 | AY126157 |
8 | 91 | Bacillus sp. | 98.8 | AY461682 |
9 | 91 | Staphylococcus xylosus | 98.6 | AY126259 |
10, 30, 46 | 93 | Lactococcus garvieae | 99.6 | AY438044 |
11 | 91 | Staphylococcus xylosus | 97.9 | AY126259 |
12, 47 | 91 | Staphylococcus xylosus | 98.9 | AY126259 |
13, 37 | 91 | Staphylococcus equorum or S. succinusc | 98.7 | AF527483 or AY126240 |
14 | 91 | Staphylococcus xylosus | 99.0 | AY126259 |
15, 33, 45 | 91 | Staphylococcus equorum or S. succinus | 98.9 | AF527483 or AY126240 |
16, 26, 44 | 111 | Lactobacillus paracasei | 99.0 | AY204894 |
17, 32 | 111 | Lactobacillus curvatus | 99.1 | AY204894 |
19, 22, 48 | 111 | Lactobacillus curvatus | 97.2 | AY204894 |
20, 23, 49 | 113 | Lactobacillus sakei | 99.5 | AB124845 |
21, 35 | 91 | Brochothrix thermosphacta | 98.9 | M58798 |
27, 39 | 93 | Staphylococcus intermedius | 100 | D83369 |
28 | 91 | Bacillus sp. | 98.8 | AY461682 |
29 | 106 | Ruminococcus sp. | 100 | AY442822 |
31 | 114 | Lactobacillus sakei | 98.2 | AB124845 |
34 | 93 | Lactococcus garvieae | 98.9 | AY438044 |
41, 50 | 93 | Macrococcus caseolyticus | 98.9 | AY126157 |
42 | 95 | Macrococcus caseolyticus | 97.7 | AY126157 |
43 | 91 | Bacillus pumilis | 98.8 | X60637 |
Bands are numbered as indicated on the DGGE gels shown in Fig. 2.
Accession number of the sequence of the closest relative found by BLAST search.
The V1 regions were 100% identical, therefore avoiding identification.