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[Preprint]. 2024 Jan 21:2024.01.20.576352. [Version 1] doi: 10.1101/2024.01.20.576352

Table 2. Obelisk read counts from paired metagenomic (DNA) and metatranscriptomic (RNA) samples.

Paired metagenomic DNA and metatranscriptomic RNA Kraken2 read counts (Bracken-corrected, see methods) for Lloyd-Price et al. 2019 20 and Maghini and Dvorak et al. 2023 79 for Obelisks -α and -β. Means taken over donors (aliased as in Table 6) and total read counts also reported. Note that no reads mapping to either Obelisk were found in the DNA datasets, suggesting an RNA-only Obelisk lifestyle. For full Kraken2 and Bracken outputs, see Data Availability.

study donor mean α
RNA
sdv α
RNA
mean
β RNA
sdv β
RNA
mean
RNA
reads
sdv RNA
reads
mean
α DNA
sdv α
DNA
mean
β DNA
sdv β
DNA
mean
DNA
reads
sdv DNA
reads
Lloyd-Price et al. 2019 A 2310 3180 1 1 13372847 8928775 0 0 0 0 12434953 7135963
Lloyd-Price et al. 2019 B 120 75 0 0 6471339 1941900 0 0 0 0 8624205 2706287
Lloyd-Price et al. 2019 C 59 85 0 0 7465073 3571490 0 0 0 0 7861229 2987857
Lloyd-Price et al. 2019 D 35 36 0 0 5991299 1931426 0 0 0 0 11930216 3223559
Lloyd-Price et al. 2019 E 5 13 0 0 10205726 4505426 0 0 0 0 10182743 4150798
Lloyd-Price et al. 2019 F 14 6 0 0 7261820 2583126 0 0 0 0 9293180 3041056
Lloyd-Price et al. 2019 G 3 4 0 0 7544276 3692007 0 0 0 0 8342623 2564388
Maghini and Dvorak et al. 2023 1 8080 5500 319 246 24534988 11197080 0 0 0 0 59395503 52132729
Maghini and Dvorak et al. 2023 2 0 0 0 0 17277835 6182452 0 0 0 0 63203793 31663431
Maghini and Dvorak et al. 2023 3 0 0 0 0 14125535 9993287 0 0 0 0 35879627 10380606
Maghini and Dvorak et al. 2023 4 0 0 0 0 15983644 5232547 0 0 0 0 19114616 10718757
Maghini and Dvorak et al. 2023 5 24 42 0 0 18237767 5281905 0 0 0 0 38104238 18496583
Maghini and Dvorak et al. 2023 6 0 0 0 0 19476656 3667861 0 0 0 0 44924227 19547694
Maghini and Dvorak et al. 2023 7 0 0 0 0 18639827 6428812 0 0 0 0 75407696 72530680
Maghini and Dvorak et al. 2023 8 4 6 0 0 18449872 6842782 0 0 0 0 27950881 10870547
Maghini and Dvorak et al. 2023 9 1 1 0 0 15639556 9328742 0 0 0 0 42868581 32749586
Maghini and Dvorak et al. 2023 10 12417 1740 1 2 13021384 4204129 0 0 0 0 20243492 8732203