TABLE 1.
Primer or primer pair | Sequence from 5′ to 3′ enda |
---|---|
R2A | CATGCCTGCAGGTCGAC |
R2B | TTTTCGAAGACATCTTGGGGATCCTAGAAAG |
R2G | GGAGGCCTAACGTCAGTTGATGC |
R2H | CACCCGCATTCTAAGACTTGCTATGCAAGCCCATGCAGGATCCCCTAAGG |
AN1a | GGTTCAATCCCTTTTCGAACACGGTTCTGCTAC |
AN1b | GTAGCAGAACCGTGTTCGAAAAGGGATTGAACC |
AN7 | GGAGAGCCCTGTTCGAAGTAGGAACGTTGTGG |
AN8 | CCACAACGTTCCTACTTCGAACAGGGCTCTCC |
139 | GTAAACCACGGAACGAGGTTC |
R2B2 | GAACCATTTGTTGGACGGTGTCGCAAATGGATCC |
R2C | TTCCATGGACTTTGATAGGATCCTAGAAAG |
R2D | CTGGTACCGACATAAATCAGTC |
R2E | TGACGCGTTTACATATTTCGGTAATACTCTGGTCACCATGGC |
R2F | GGGAGCTCCTTAGTACTACAG |
R2G2 | GGAGGCCTAACGTCAGTTGATGCATTG |
1st | CAGTGAATTCTGGTCTTTTTAGAGATTTACAG |
ANB/ANC | GAAAATCAACGTTCGAAATAAGCTCTCTATTG CAATAGAGAGCTTATTTCGAACGTTGATTTTC |
R1A/R1B | GTGCCGCATGCGAAAGATCTTGCAAGAAAGCGATG CATCGCTTTCTTGCAAGATCTTTCGCATGCGGCAC |
AN3 | CACTGTGTATGGTTCGAAGACATATCTAAG |
AN4 | CTTAGATATGTCTTCGAACCATACACAGTG |
AN5 | CCGTATGGGAGAAGATCTAATTGTGACGGCG |
AN6 | CGCCGTCACAATTAGATCTTCTCCCATACGG |
R1E | GTTTCTGACTCGTCTTTCGAACGTTGAAGAATTTG |
R1F | CAAATTCTTCAACGTTCGAAAGACGAGTCAGAAAC |
R1G | CGGCGAGCTCGTCGGAGATCTGATCTTTAATTGTG |
R1H | CACAATTAAAGATCAGATCTCCAGCGAGCTCGCCG |
119 | CGGTCACTATTGAAGAGC |
AN1.3 | GTAGTACGCGTACTGCATGC |
AN4.1 | CAAACGTGATATCGGTACAG |
AN5.1 | CTGTACCGATATCACGTTTG |
seq3.2 | GGACTCAGGGCTCAACTC |
Marker restriction sites are underlined and nucleotide substitutions are in bold type. Pairs of primers used in PCR with Pfu DNA polymerase have both sequences on one line.