TABLE 1.
Fitness values of clones after 15 plaque-to-plaque transfers and 1, 5, and 10 large population passages
Clonea | Fitness value
|
Maximal fitness increasec | |||
---|---|---|---|---|---|
Final plaque-to-plaque populationb | Large population passage
|
||||
1 | 5 | 10 | |||
D | 1.23 | NDf | 1.57 | NDd,f | 0.34 (+28) |
K | 1.54 | NDf | 1.70 | 2.5 | 0.96 (+62) |
I | 1.61 | NDf | 1.32 | 5.64 | 4.03 (+250) |
G | <0.001e | 1.73 | 1.61 | 1.78 | 1.78 (+178,000) |
The origins of the HIV-1 clones are detailed in Materials and Methods and were described previously (48).
All clones were plaque passaged 15 times, except for clone G, which went to extinction in passage 7.
Maximal fitness increases were determined between the plaque-to-plaque and large population passages. The values used for the comparison are marked in bold. Values in parentheses are percentages for all clones.
We were unable to determine the fitness of clone D15p10. This clone displayed a mixture of variants, and the HTA after the competition passages could not be analyzed.
Limit of detection (see Materials and Methods).
ND, not done.