Table 2.

Differentially expressed gene counts. Counts and percentages of differentially expressed (DE) genes among all genes ($n=21,415$) and matrisome genes ($n=964$) within phases and after pooling (computing union of) results for each phase. Includes counts of upregulated and downregulated genes for each phase and among all phases

Phase	Total DE	% DE	Upregulated	Downregulated
All genes (n = 21,407)
Proliferative	6841	32%	2585	4256
Early-secretory	2889	13%	493	2396
Mid-secretory	1327	6%	312	1015
Union of phases	6961	33%	2603	4357
Matrisome genes (n = 964)
Proliferative	290	30%	179	111
Early-secretory	96	10%	44	52
Mid-secretory	49	5%	29	20
Union of phases	296	31%	181	115