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. 2024 Jan 17;10:1274482. doi: 10.3389/fmed.2023.1274482

Table 1.

Organoid detection pipelines.

Name Organoid model Imaging pipeline Organoids analysis Co-culture Ref.
OrganoSeg

  • Colorectal cancer

  • Pancreas

  • Grayscale images (brightfield, phase-contrast, differential-interference contrast)

  • One Focus level

 Size, distributions and morphology No (22)
OrgaQuant Intestinal epithelium

  • Grayscale images (brightfield)

  • One Focus level

 Diameter in pixel No (23)
OrganoidTracker Small intestinal epithelium

  • Immune fluorescent labeled H2B-mCherry

  • One Focus level

 Tracking No (24)
DNN Alveolar

  • Grayscale images (brightfield)

  • Merged z-stacks

 Tracking number No (21)
OrganoID Pancreatic cancer

  • Grayscale images (brightfield)

  • One Focus level

 Area tracking No (25)
D-CryptO Colon culture

  • Grayscale images (brightfield)

  • Merged z-stacks

 Size diameter number No (1)