TABLE 1.
Percent nucleotide sequence identity of phylogenetic marker genes to published N16961 sequences among V. cholerae strains used in this study
| Gene | % Identity to V. cholerae strain:
|
|
|---|---|---|
| TPb | SIOc | |
| 16S rRNA | 99.9 | 99.5 |
| 23S rRNA | 99 | 99 |
| Intergenic spacer region type 2a | 99.0 | 99.0 |
| phrB-1 | 96 | 96 |
| phrB-2 | 98 | 97 |
| uvrD | 94 | 93 |
| helD | 99 | 95 |
| xerC | 98 | 97 |
| intl4 | 97 | 90 |
a
Intergenic spacer region type 2 comparisons were made to the N16961 type 2 ISR amplified and sequenced for this study. All other comparisons were made to the sequenced N16961 genome.
b
Isolated from Torrey Pines Beach State Preserve estuary.
c
Isolated from SIO pier during dinoflagellate bloom.