Table 1.
Tape Stripping | Dermal Biomarker Patch (Mindera Health) | Epidermal Curettage (Castle) | RISH Staining | scRNA-seq | |
---|---|---|---|---|---|
Sampling technique | 1–20 tape strips applied to the skin | Dermal biomarker patch applied to the skin for 5 minutes | 10 scrapes with curette | Skin biopsy | Skin biopsy |
Layers of skin samples | Stratum corneum | Epidermis and upper dermis | Not publicly disclosed | Epidermis and dermis | Epidermis and dermis |
Cryopreservation necessary | Yes. Must store tape strips at –80 °C | No. Can be stored at 4 °C and processed within 72 hours | Not publicly disclosed | No | Samples typically processed fresh |
Likelihood of scar | Low | Not publicly disclosed | Not publicly disclosed | High | High |
Integration into clinical workflow1 | Can be collected relatively rapidly; requires specific expertise, normalization, and possibly slow turnaround time. | Can be collected relatively rapidly. Turnaround time and cost of commercial service not yet clear. | Can be collected relatively rapidly. Turnaround time and cost of commercial service not yet clear. | Integrates well with IHC workflow in dermatopathology laboratories with rapid turnaround for specific targets. | Resource-intensive sample processing, sequencing, and data analysis. |
Throughput/number of markers | Full transcriptome (for RNA-based methods) | Full transcriptome | 28 transcripts | One marker per staining; multiple markers can be batched | Full transcriptome |
Requires sequencing | Yes | Yes | No | No | Yes |
Data analysis | Computational pipelines for microarray or RNA- sequencing data. | Computational pipelines with proprietary algorithms. | Comparison of count threshold values from qPCR. | Manual or automated quantification of positive cells on microscopy slide. | Computational pipelines for scRNA-seq data. |
Histologic analysis inherent | No | No | No | Yes | No |
Abbreviations: RISH, RNA in situ hybridization; scRNA-seq, single-cell RNA sequencing.
Cost will also be an important factor in comparing the feasibility of workflow integration, but there are not enough data at this time to compare costs between methods.