Table 1.
Sensitivity and specificity comparison between ContScout, Conterminator, Diamond, MMSeqs and BASTA on manually decontaminated genomes
| Tool | Genome | True positives | False negatives | False positives |
|---|---|---|---|---|
| ContScout | A. zonatus | 1476 | 0 | 0 |
| Conterminator | A. zonatus | 948 | 528 | 0 |
| BASTA | A. zonatus | 1341 | 135 | 0 |
| MMSeqs | A. zonatus | 1059 | 417 | 0 |
| Diamond | A. zonatus | 1155 | 321 | 0 |
| ContScout | P. xuthus | 2467 | 60 | 1 |
| Conterminator | P. xuthus | 57 | 2470 | 0 |
| BASTA | P. xuthus | 542 | 1985 | 0 |
| MMSeqs | P. xuthus | 207 | 2320 | 0 |
| Diamond | P. xuthus | 132 | 2395 | 0 |