Prognosis-associated phosphosites in the liver cancer dataset.A, the numbers of phosphosites significantly associated with poor prognosis (p < 0.01 and HR > 2) in DeepRescore2-derived data and their status in the analysis of PhosphoRS-derived data. B, the numbers of phosphosites significantly associated with good prognosis (p < 0.01 and HR < 0.5) in DeepRescore2-derived data and their status in the analysis of PhosphoRS-derived data. C, Kaplan Meier curves for patients stratified based on the median abundance of NAV3 RNA, NAV3 protein, and NAV3_S1190 phosphorylation, respectively. D, Kaplan Meier curves for patients stratified based on the median abundance of MIEF1 RNA, MIEF1 protein, and MIEF1_S79 phosphorylation, respectively. p values are based on the log-rank test.