Table 1. Primers used for the respiratory syncytial virus RSVAB-WGS and RSVAB-GF sequencing method.
| Primer | Sequence (5’–3’) |
|---|---|
| Mix 1 RSVAB WGS | |
| RSVCombinitial | ACGCGAAAAAATGCGTACWACA |
| RSVWGS4R | CATGWTGWYTTATTTGCCCC |
| RSVWGS2F | CACTWACAATATGGGTGCC |
| RSVWGS1R | TCCATKGTTATTTGCCCC |
| RSVWGS3.2F | ACATGGAAAGAYATYAGCC |
| RSVWGS2R | CRTTYCTTAARGTRGGCC |
| RSVWGS3.2R | TTGCATCTGTAGCAGGAATGG |
| RSVCombending | ACGAGAAAAAAAGTGTCAAAAACTAA |
| Mix 2 RSVAB WGS | |
| RSVCombinitial | ACGCGAAAAAATGCGTACWACA |
| RSVWGS1R | TCCATKGTTATTTGCCCC |
| RSVWGS2F | CACTWACAATATGGGTGCC |
| RSVWGS8R | TCMAWYTCWGCAGCTCC |
| RSVWGS5R | CAAACATTTAATCTRCTAAGGC |
| RSVWGS6F | TTATAYAGATATCAYATGGGTGG |
| RSVWGS6R | CCCTCTCCCCAATCTTTTTC |
| RSVCombending | ACGAGAAAAAAAGTGTCAAAAACTAA |
| Mix RSVAB-GF | |
| OG1-21 | GGGGCAAATGCAACCATGTCC |
| RSVGF-R | TTCGYGACATATTTGCCCC |
The primers were organised by their position in the genome and the amplification mix in which they were employed. Primers RSVCombinitial, RSVWGS1R, RSVWGS2F and RSVCombending were used in both mixes.