Table 1.

Comparison table of datasets, features, and analyses

	Dataset types	Interactive genome browser	Reporting aliases	Reporting targets	Target enrichment analysis	Phenotype simulation analysis	Correlation analysis	Metadata-mediated correlation analysis	Correlated gene enrichment analysis	Fragment-specific survival analysis	Literature knowledge-graph analysis	Dimensionality reduction analysis	Clustering analysis	Differential Expression Analysis	Differential survival analysis
tRFUniverse	TCGA TARGET NCI-60 Biological Fluids AGO CLASH -Seq AGO CLEAR-Seq AGO CLIP-Seq	X	X	X	X	X	X	X	X	X	X	X	X	X	X
tRFexplorer	TCGA NCI-60	X					X							X
MINTbase	TCGA
OncotRF	TCGA	X	X				X		X	X				X	X
tRFdb	Selected smRNA-Seq data from NCBI-SRA
tRFtarget	–		X	X (predicted)
tRFTar	AGO CLASH-seq AGO CLIP-Seq			X	X
tRFTars	AGO CLASH-seq AGO CLEAR-CLIP			X
tsRBase	Selected smRNA-Seq data from NCBI-SRA AGO CLASH-seq AGO CLEAR-CLIP			X
tsRFun	TCGA AGO CLASH-seq AGO CLEAR-CLIP AGO CLIP-Seq			X	X					X				X	X

Table showing all the datasets, features, and analyses implemented in tRFUniverse and on the other compared databases.