Abstract
Environmental conditions experienced within and across generations can impact individual phenotypes via so-called ‘epigenetic' processes. Here we suggest that endocrine signalling acts as a ‘sensor' linking environmental inputs to epigenetic modifications. We focus on thyroid hormone signalling and DNA methylation, but other mechanisms are likely to act in a similar manner. DNA methylation is one of the most important epigenetic mechanisms, which alters gene expression patterns by methylating cytosine bases via DNA methyltransferase enzymes. Thyroid hormone is mechanistically linked to DNA methylation, at least partly by regulating the activity of DNA methyltransferase 3a, which is the principal enzyme that mediates epigenetic responses to environmental change. Thyroid signalling is sensitive to natural and anthropogenic environmental impacts (e.g. light, temperature, endocrine-disrupting pollution), and here we propose that thyroid hormone acts as an environmental sensor to mediate epigenetic modifications. The nexus between thyroid hormone signalling and DNA methylation can integrate multiple environmental signals to modify phenotypes, and coordinate phenotypic plasticity at different time scales, such as within and across generations. These dynamics can have wide-ranging effects on health and fitness of animals, because they influence the time course of phenotypic adjustments and potentially the range of environmental stimuli that can elicit epigenetic responses.
This article is part of the theme issue ‘Endocrine responses to environmental variation: conceptual approaches and recent developments’.
Keywords: epigenetics, phenotypic plasticity, temperature, artificial light-at-night, endocrine-disrupting compounds
1. Introduction
Most hormones are multi-functional and respond to a range of environmental signals to modify phenotypic traits [1–3]. In vertebrates, for example, thyroid hormones regulate development and life history, as well responses to environmental temperature variation [4,5]. Similarly, glucocorticoids mediate animal responses (e.g. metabolism and growth) to environmental signals [6], and hormones such as thyroid hormones and glucocorticoids may interact to mediate phenotypic responses [7]. In addition to natural variation, anthropogenic environmental signals modify endocrine-mediated functions [8,9]. The combined effects of these natural and anthropogenic environmental sources of variation (and disruption) are likely to determine the success of populations and species, so that there is a strong conservation dimension in unravelling environment–endocrine interactions [10].
Environmental variability can modify phenotypes during the lifetime of an organism and across generations via epigenetic modifications [11,12]. Importantly, endocrine signalling can be linked to epigenetic processes such as DNA methylation [13], which together can alter physiology, behaviour and ecology of animals [14–16]. Epigenetic processes modify gene expression programmes without altering respective DNA sequences but by the addition (or removal) of functional groups (e.g. methyl groups) to DNA or histone molecules [17,18]. One of the best-known epigenetic mechanisms involves the methylation (or de-methylation) of cytosine residues on DNA, and the addition or removal of a methyl group can repress or activate transcription, respectively [19,20]. Linking DNA methylation to environmental inputs provides a mechanism by which phenotypes could be remodelled to alter performance in variable environments [21,22]. Such phenotypic plasticity can be beneficial by compensating for negative environmental effects, or detrimental when it leads to phenotype–environment mismatches [23].
Repression of transcription by DNA methylation involves recruitment of methyl-CpG-binding proteins to the methylated site, which in turn recruit histone deacetylases and their associated repressive machinery [24,25]. DNA methylation is mediated by DNA methyltransferases (DNMTs), of which DNMT1 maintains methylation patterns across cell divisions, and DNMT3 alters methylation patterns in response to environmental cues [17,26,27]. The action and regulation of DNMT3 is therefore interesting in understanding induction of alternative phenotypes in response to environmental change (phenotypic plasticity). In reverse to the actions of DNMTs, methylated regions of DNA may be de-methylated by ten–eleven translocase (TET) enzymes, although many regions of DNA are protected from de-methylation, so that methylation patterns can cause long-term changes to animal phenotypes [28].
While endocrine signalling pathways and epigenetic regulators are often invoked as distinct processes, epigenetic effects often have endocrine origins. Epigenetic modifiers can be recruited and functionally regulated through direct or indirect interactions with hormone receptors [29–32]. Nuclear receptors (NRs), which are central to many endocrine pathways, in particular are principal regulators of transcription by orchestrating key components of the transcriptional initiation complex [33–35]. However, concomitant interactions of NRs with chromatin remodelling machinery, including histone (de)acetylases, histone methyltransferases and DNMTs, mean that many NRs also exert epigenetic control [31,36,37]. In addition to this direct mode of regulation, NRs can also regulate the expression of genes encoding chromatin modifiers by interacting with response elements in their promoters. Expression of DNMT1 in mice, for example, is regulated by cross-talk between the NR oestrogen-related receptor γ and its cofactor SHP [38]. Epigenetic remodelling therefore often represents an intrinsic component of endocrine signal transduction pathways, and not necessarily a parallel or independent processes. Within- and between-pathway feedback and cross-talk can also have an epigenetic dimension, because epigenetic modifiers can regulate the activities and sensitivities of upstream processes in their own and parallel pathways [39]. Given this complexity of evolved endocrine responses to ‘natural' variation, anthropogenic disruption of hormone signalling is likely to produce unexpected and unpredictable effects [1,40].
Most ecosystems in the world are experiencing unprecedented environmental change because of human activity. In addition to climate change, artificial light-at-night (ALAN) and endocrine-disrupting compounds (EDCs) are two of the most dominant anthropogenic impacts. All three are currently increasing at alarming rates [41,42], and undermine hormone-mediated signalling [43–45]. Importantly, these anthropogenic drivers can alter qualitatively how animals respond to natural variation, and existing knowledge of responses to natural environmental variability may now be inadequate [1,46,47]. Hence, in order to facilitate effective conservation there is considerable urgency to assess how animal responses are altered in the presence of endocrine disruption [48].
In this Opinion piece, we suggest that endocrine signalling acts as an environmental ‘sensor' to link epigenetic modifications of phenotypes to environmental variation (figure 1). We focus on the interactions between thyroid hormone and DNA methyltransferase 3 as two important signalling systems in animals. We note, however, that there are other potential endocrine (e.g. glucocorticoid hormones and receptors) and epigenetic (e.g. histone modifications) mechanisms that could act in a similar manner [18,32]. Thyroid hormone is closely associated with environmental sensing by its integration with the hypothalamus and hence temperature and light perception [2,49]. We briefly summarize the mode of action of thyroid hormone, and how it can interact with DNA methylation via DNMT3. We then discuss how these mechanistic relationships can alter epigenetic responses to environmental change.
Figure 1.
Conceptual outline. (a) We propose that endocrine mechanisms act as a sensor to link environmental signals to epigenetic processes and thereby phenotypic plasticity. The question mark indicates that this proposition is as yet unresolved experimentally. (b) In particular, we propose that thyroid hormone transmits light and temperature signals via the hypothalamus. Thyroid signalling is modified by differential expression of different deiodinase enzymes (dio), which control production of active hormone (T3). Signalling via T3 occurs via thyroid receptors (TR), which bind to thyroid response (TRE) elements in the promoters of genes. Genes for DNA methyltransferase 3 (DNMT3), responsible for adding methyl groups to DNA, and ten–eleven translocases (TET), responsible for removing methyl groups from DNA, contain TRE and are thereby regulated by thyroid hormone. Conversely, TR transcription is regulated by DNMT and TET, and together these mechanisms modify gene expression programmes in an environmentally sensitive manner. However, this pathway is vulnerable to endocrine disruption by anthropogenic inputs, such as endocrine-disrupting compounds (EDCs). (Online version in colour.)
2. Actions and interactions between thyroid hormone and DNMT3
(a) . Environmental signal transduction
Changed DNA methylation patterns under different environmental conditions imply that DNA methylation is linked to environmental sensing. However, to the best of our knowledge a causal, sensory link between DNMT3 activity and environmental change has not been established. Here, we suggest that environmental signals such as light and temperature act on the thyroid hormone signalling cascade, which then induces de novo methylation or de-methylation. The hypothalamus is crucial for processing temperature and light signals received via transient receptor potential ion channels (TRPs) and the retina (via the retino- and geniculo-hypothalamic tracts) and pineal gland, respectively [2,49]. The hypothalamic sensitivity to thyroid hormones or the hypothalamus–pituitary–thyroid (HPT) axis itself can thereby represent a mechanistic link connecting environmental signals to epigenetic changes in DNA methylation patterns (figure 1). The specificity of DNA methylation patterns in different organs could be explained by tissue-specific responses to thyroid signals [50].
(b) . Thyroid hormone action
Thyroid hormone production and release are controlled via the hypothalamic–pituitary–thyroid axis through the sequential actions of thyroid-releasing hormone and thyroid-stimulating hormone. There is some variation in this canonical pathway, and during metamorphosis in amphibians and fish, for example, the stress-induced corticotropin-releasing hormone controls thyroid-stimulating hormone, and metamorphosis is closely linked to environmental factors such as tadpole density [51]. During development in anemone fish (Amphiprion ocellaris), thyroid hormones orchestrate metabolism, morphological changes and behaviour to match juveniles to their ecological context [52]. Beyond metamorphosis, thyroid hormone more generally regulates development, at least in chordates [53]. Thyroid hormone itself can act both centrally through the central nervous system and peripherally on target tissues [54]. The genomic actions of thyroid hormone are mediated via thyroid receptors (TRs) which regulate gene expression by binding to thyroid response elements (TREs) on promoters of target genes [4]. Unliganded TRs may interact with co-repressors to repress transcription of genes that are regulated by triiodothyronine (T3). By contrast, T3-liganded TRs induce transcription by recruiting co-activators [55]. Repression of transcription by unliganded TRs involves indirect protein interactions with histone methylases and deacetylases, which alter chromatin structure and thereby modify access to DNA by transcriptional regulators; binding of T3 to TR reverses these processes [56,57].
Feedback controls help modulate plasma concentrations of thyroid hormones at a whole-animal level [58], and target tissues also regulate and remodel their sensitivities to circulating concentrations of thyroid hormone through local mechanisms that regulate the bioavailability and bioactivity of the hormone [50]. There are a number of cell-surface transporters (e.g. MCT8, OATPC1), for instance, that modulate intracellular concentrations of thyroid hormone [50]. The three different paralogues of deiodinase enzyme can also cleave different iodo-groups from thyroid hormone and its metabolites, thereby altering physiological activity [59]. Additionally, cells can fine-tune their sensitivities to thyroid hormone by regulating the expression and isoform profiles of TRs. While the main receptors for thyroid hormones are nuclear receptors (i.e. TRs), a cell-surface receptor (integrin αVβ3) also supports important roles in thyroid hormone signalling [60]. Lastly, thyroid receptors can bind to positive and negative TREs in the promoters of target genes. Positive TREs represent the traditional subtype (described above), whereas negative TREs reverse the transcriptional effects of TRs—they activate transcription in their unliganded state and repress transcription in the presence of thyroid hormone [34].
(c) . Thyroid hormone regulates DNA methyltransferase transcription
Thyroid hormone can regulate transcription of DNA methyltransferase genes via TRE at the dnmt locus. In frog (Xenopus laevis) tadpoles, T3 controls metamorphosis, during which global DNA methylation patterns change [61]. The DNMT3a gene of X. laevis contains a TRE, and DNMT3a (but not DNMT1) mRNA levels increased with the administration of T3 to tank water [62]. Similarly, the dnmt3a locus in mice has two functional TREs, and administration of T3 increased brain DNMT3a transcript abundance [63]. These data from frogs and mice indicate that TREs on dnmt3 are conserved at least among tetrapods [63]. The link between thyroid hormone and DNMT3 is also seen during mouse liver differentiation, where T3 spikes were associated with alterations in DNA methylation patterns [57]. Additionally, grooming of mouse pups by mothers increased DNMT3a mRNA levels in the hippocampus of pups. These changes in mRNA levels were accompanied by an association between circulating T3 levels and DNMT3a abundance, and increased TR binding by T3 led to increased DNA methylation at the oxytocin promoter [64]. Together, these data indicate that DNMT3 transcription and DNA methylation patterns can be regulated by T3 and TR binding to TRE in diverse groups of vertebrates and in different contexts. We note, however, that the number of species and contexts studied is sparse as yet.
Thyroid hormone can also induce DNMT3 transcription by mediating de-methylation of the dnmt3 locus. In the X. laevis tadpole brain, administration of exogenous T3 caused de-methylation of the dnmt3a gene, and recruitment of TET3 to the locus [61]. Additionally, the TET2 gene contains a TRE that activates transcription in the presence of bound TRs [61]. By contrast, induced hypothyroidism for 5 days after birth increased the total activity of DNMT enzymes in the hippocampus of rats, suggesting a T3-mediated pathway to repress DNMT [65]. However, total activity of DNMT may be determined primarily by the maintenance DNMT1 enzyme, so that the functional significance of total DNMT activity for induction of different phenotypes via DNMT3 is unresolved.
Interestingly, during ageing in humans there is increased methylation of the thyroid receptor β (TRβ) promoter regions, which is associated with lower TRβ mRNA levels [66]. Similarly, decreased mRNA levels of TRα in the hippocampus of adolescent rats following excess folate consumption may have been caused by increased methylation of the TRα promoter region [67]. The thyroid axis itself, therefore, can be regulated by DNA methylation, and there is a potential for a feedback loop where T3 regulates DNMT3, which in turn regulates TRs.
Together, these data show that epigenetic regulation can represent an intrinsic component of thyroid hormone signal transduction pathways, and that there is cross-talk between thyroid hormone signalling and epigenetic regulation of phenotypes. It is less clear to what extent environmental signals modulate this cross-talk. Thyroid hormone signalling is clearly linked to environmental inputs, and DNA methylation patterns change in response to environmental change. However, whether or not the environment acts independently on each process or whether the environmental signal is transduced by a linked response remains to be demonstrated experimentally. Uncovering these relationships is particularly important for wildlife populations that are exposed to increasingly unstable environments, and where the temporal resolution of responses can impact ecological relationships [68]. Currently, knowledge of interactions between hormones and epigenetic processes stems almost entirely from model organisms, and expanding this knowledge to wildlife is an important future direction.
3. Responses to environmental variation
(a) . ‘Natural' environmental variation
Environmental variation is a selection pressure that has shaped genotypes, and thereby phenotypes, over evolutionary time. Adaptation to different environments can underlie biogeography by determining optimal mean environments of different species [69]. However, environments are rarely stable, and species must respond to mean conditions as well as to variations around the mean. The relative timing of perturbations and physiological responses is therefore crucial in determining the efficacy of matching phenotypes to prevailing conditions [70]. The time course of responses depends very much on the underlying mechanisms. Endocrine responses can be rapid and elicit physiological responses within seconds to hours, such as in glucocorticoid-mediated responses to stress [71]. However, hormones can also have longer-lasting effects [71,72], and thyroid hormone for example regulates thermal acclimation over periods of several weeks [5]. Epigenetic responses such as DNA methylation concurrently alter phenotypes relatively permanently, for example by mediating developmental effects that can last throughout life and even across generations [73]. The temporal resolution of physiological responses to environmental change—with respect to both onset and duration of the response—would depend on the interaction and synchrony between these mechanisms. Endocrine and epigenetic processes can be intrinsically linked, as we summarized above, and mechanistically resolving the extent to which they co-regulate plastic responses by wildlife is critical to determine whether animal responses will be sufficient to buffer the increased environmental variation and novel interactions they face. These dynamics are particularly important in the context of anthropogenic impacts such as ALAN and EDCs, which can disrupt hormone signalling but may also have an epigenetic dimension because of endocrine–epigenetic interactions [15,74].
Regular fluctuations such as annual light and temperature cycles drove the evolution of endocrine and epigenetic regulatory systems to coordinate physiological processes (e.g. reproduction, development, acclimatization) to coincide with favourable environmental conditions [75–77]. In many seasonally breeding vertebrates, winter conditions inhibit neuroendocrine functions associated with reproduction, and seasonal changes in photoperiod or temperature can also elicit changes in DNA methylation patterns [78]. For example, in hamsters (Phodopus sungorus), responses to seasonally changing light cycles were mediated by thyroid hormone signalling through tanycytes of the hypothalamus. Winter photoperiods upregulated tanycyte deiodinase enzyme 3 (dio3) and downregulated deiodinase 2 (dio2), thereby promoting T4-conversion to its inactive form, reverse T3 (rT3). Consequently, thyroid hormone signalling and reproductive hormone (e.g. gonadotropins, Gn) production were reduced [79]. By contrast, spring and summer conditions elevated tanycyte dio2 (and depressed dio3) to convert T4 into active T3, thereby increasing thyroid hormone signalling and production of Gn through activation of kisspeptin neurons [79]. Interestingly, DNA methylation of the dio3 promoter is critical for photoperiodic time measurement, and methylation was reversible in the hypothalamus of hamsters: short photoperiod decreased DNMT3a and b mRNA levels, inhibited dio3 methylation, and increased its mRNA levels [76,79] leading to a reduction in T3 signalling. Importantly, these trends were reversed with increasing photophase in spring. Hence, the interplay between TH signalling and DNA methylation in the hypothalamus of hamsters optimized the timing of reproduction, which, however, also leaves it vulnerable to EDCs and ALAN [9].
Temperature on its own impacts both thyroid signalling and DNA methylation, although it is possible that these processes are linked ultimately. Thyroid hormone regulated thermal acclimation of cardiac and muscle function, and metabolism in zebrafish and lake whitefish (Coregonus clupeaformes) [77,80]. For example, zebrafish compensated perfectly for a 10°C temperature difference, with no significant difference in swimming performance between 18- and 28°C-acclimated fish when tested at their respective acclimation temperatures [81]. Pharmacologically induced hypothyroidism eliminated this compensatory response, which, however, could be re-instated with experimental supplementation of active T2 and T3 [81].
DNA methylation patterns also differ between different thermal regimes [82–84], and changes in global DNA methylation patterns can parallel the effects of thermal acclimation [85–87]. Temperature affected methylation of the myogenin promoter in Senegalese sole (Solea senegalensis), where increased DNMT3b mRNA levels at cooler temperatures were associated with increased promoter methylation, and decreased myogenin mRNA levels and muscle growth in embryos [88]. These correlations between DNA methylation patterns and thermal responses hint at a functional relationship that could be integrated with thyroid hormone signalling. DNMT3a also played a functional role in mediating developmental and transgenerational thermal plasticity in zebrafish. Unlike wild-type fish, offspring of dnmt3a knock-out zebrafish (raised and bred at 28°C) did not survive rearing at a relatively cool temperature (23°C), but survived equally as well as wild-type fish when reared at the parental temperature (28°C) [11]. Interestingly, acclimating parents to 23°C for two months prior to breeding restored survivorship of dnmt3a knock-out fish reared at 23°C to wild-type levels, indicating that different mechanisms can interact to match phenotypes to their prevailing conditions [11]. It is possible that our earlier studies showing a regulatory role of thyroid hormone [5] and of DNMT3a [11] in thermal plasticity in fact detailed different aspects of the same pathway that integrates endocrine signalling with epigenetic modifications. Understanding these mechanistic links is important because they determine the temporal resolution of animal responses to environmental variation—in this case coordinating transgenerational and within-generation responses.
(b) . Anthropogenic impacts: compounded perturbations
Environmental variability can drive adaptation or plasticity so that disturbance–recovery cycles have little long-term effect [69,89]. However, when several perturbations coincide, their compounded effect may exceed the capacity for compensatory responses. Compounded effects are particularly likely with human impacts that can occur relatively suddenly and concurrently with natural variation [89,90]. Three of the major anthropogenic impacts are climate change, pollution and ALAN. Climate change alters mean temperatures and temperature variability, both of which can impact thyroid hormone signalling and hence DNA methylation. For example, unusually warm winters cause a mismatch between seasonal light cycles and temperature cycles that impacted thyroid hormone signalling in mosquitofish (Gambusia holbrooki) [91] and caused physiological dysfunction in mice [92]. Similarly, heatwaves can have a broad range of epigenetic effects [93] and caused changes to methylation patterns in a polychaete (Spiophanes tcherniai) [85] that can potentially be passed across generations [94].
Thyroid hormone is also responsive to light and its signalling is important to mediate physiological responses to natural cycles in photoperiod and temperature (see above). Not surprisingly, therefore, ALAN disrupts thyroid hormone signalling and thereby its downstream targets [9,95]. Electric light from street lights, buildings and vehicles, for example, means that built-up areas are rarely completely dark [42,96]. In addition to direct electric light, skyglow caused by artificial light scattered by dust, water and gas molecules extends increased light levels to areas not directly illuminated [97]. ALAN has substantially increased globally [98], and the trend of increased ALAN is likely to increase along with increasing urbanization [99]. ALAN is an endocrine disruptor [2,45] that causes a broad range of physiological and behavioural consequences [100,101]. ALAN also caused changes to DNA methylation patterns, notably global hypomethylation in mouse oocytes [102], and in the pancreas in adult rats [14]. These effects are similar to overexposure to thyroid hormone, which decreased DNA methylation in male mouse germ cells [13]. Compared with the natural photoperiod, exposure to constant light also increased DNMT1 and 3 mRNA levels in fast muscle of juvenile Atlantic cod (Gadus moruha), which was accompanied by increases in body mass [103].
A vast range of human-manufactured chemicals are now present in the environment and many disrupt endocrine function [104–106]. The thyroid axis is particularly susceptible to chemical endocrine disruption by industrial chemicals that are commonly found in the environment globally, including bisphenols, halogenated organochlorides and polychlorinated biphenyls [8,107,108]. EDCs can disrupt nearly all steps in the thyroid signalling cascade from thyroid production and transport to disruption of deiodinase enzymes and thyroid receptors [8,109–111]. Bisphenols, in particular, can be TR antagonists by binding TRs to block T3 access, or can act as ligands to stimulate signalling [107,112]. The downstream consequences of thyroid hormone disruption by EDCs are not well characterized but may involve impaired locomotor function [113], and neurodevelopmental disruption within and across generations [114]. For example, the pesticide chlorpyrifos decreased T3 and T4 levels and disrupted sensory development in surgeonfish (Acanthurus triostegus). Exposed fish thereby experienced higher levels of predation, but these effects were reversed with supplementation of TH [44].
Synthetic chemicals can also have epigenetic effects [115], but it is not clear to what extent these are linked to endocrine signalling, if at all. Numerous chemicals (e.g. bisphenols) that interfere with thyroid hormone synthesis and transport, and TR signalling are also known to cause epigenetic effects, including changes in DNA methylation, histone marks, and noncoding RNAs [115]. There may be an endocrine dimension, and exposure of embryonic zebrafish to brominated flame retardant (TDCIPP), for example, caused abnormal TH levels in their offspring (increased T3 but decreased T4), which was associated with global hypermethylation, including of genes associated with thyroid hormone transport [114]. These data indicate a link between EDC, thyroid hormone levels and DNA methylation.
4. Conclusion
Here we propose that thyroid signalling and DNA methylation are part of the same pathway, with thyroid hormone acting as the environmental sensor that can regulate DNMT3 and TET enzyme transcription and recruitment. Although direct experimental evidence demonstrating an environment–endocrine–epigenetic axis is sparse, sufficient knowledge of these processes has now accumulated to provide circumstantial evidence that a sensory endocrine–epigenetic link is likely. Signal transduction between the environment and phenotype is crucial to optimize plastic responses to environmental change. It is important to understand the mechanisms that underpin these plastic responses because they determine the range of environmental signals that organisms can respond to, the timing of the response, and its persistence. We focused on the interaction between thyroid hormone and DNA methylation here, which could explain epigenetic responses to light and temperature. However, there are other pathways that can broaden the range of environmental signals which can induce epigenetic responses. For example, glucocorticoid receptors respond to a broad range of environmental signals via circulating glucocorticoids—including social stress and anxiety, and the reproductive and energetic environments [116–119]—and can change epigenetic states in response to the environment [32]. Endocrine responses to environmental inputs can occur at different time scales (e.g. from seconds to seasons). Different epigenetically mediated phenotypes that can persist across generations [73,120] may be induced therefore by environmental signals of varying length. However, an endocrine–epigenetic axis also means that epigenetic modifications of phenotypes are sensitive to endocrine disruption such as by EDCs and ALAN [15,45,74]. Hence, the underlying mechanisms very much determine the dynamics of phenotypic responses to environmental variation (phenotypic plasticity). Conservation and management rely on assessing animal responses to environmental change, which requires an understanding of these dynamics, particularly considering that change in multiple environmental drivers occurs concurrently and at different time scales [121,122]. It is important therefore to link the molecular mechanisms we describe here to broader-scale responses relevant for ecology and conservation, particularly when multiple stressors act through overlapping signalling pathways [123].
Even though there is a lot of excellent work on endocrine-mediated responses to the environment and on epigenetic mechanisms underlying phenotypic change, the mechanistic link between the two remains unresolved. Interesting research areas that remain to be addressed experimentally include (i) to determine whether or not the environment acts independently on each process or whether the environmental signal is transduced by a linked response; (ii) to establish the breadth of a potential endocrine–epigenetic axis with respect to different hormones and epigenetic processes. Addressing this last point would also contribute to assessing how environmental disruption such as by EDCs can affect phenotypes. Also, (iii) knowledge of interactions between hormones and epigenetic processes stems almost entirely from model organisms, and expanding this knowledge to wildlife is an important future direction.
Data accessibility
This article has no additional data.
Declaration of AI use
We have used AI-assisted technologies in creating figure 1.
Authors' contributions
F.S.: conceptualization, funding acquisition, investigation, project administration, writing—original draft, writing—review and editing; A.G.L.: conceptualization, funding acquisition, investigation, writing—review and editing.
Both authors gave final approval for publication and agreed to be held accountable for the work performed herein.
Conflict of interest declaration
We declare we have no competing interests.
Funding
F.S. and A.G.L. were supported by Australian Research Council Discovery (grant no. DP220101342), and A.G.L. was supported by a Natural Sciences and Engineering Council of Canada (NSERC) Discovery (grant no. DGECR 2021-00123) and Alliance Collaboration (grant no. ALLRP 571888-21).
References
- 1.Polazzo F, Roth SK, Hermann M, Mangold-Döring A, Rico A, Sobek A, den Brink PJV, Jackson MC. 2022. Combined effects of heatwaves and micropollutants on freshwater ecosystems: towards an integrated assessment of extreme events in multiple stressors research. Glob. Change Biol. 28, 1248-1267. ( 10.1111/gcb.15971) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 2.Ouyang JQ, Davies S, Dominoni D. 2018. Hormonally mediated effects of artificial light at night on behavior and fitness: linking endocrine mechanisms with function. J. Exp. Biol. 221, jeb156893-11. ( 10.1242/jeb.156893) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 3.Seebacher F. 2022. Interactive effects of anthropogenic environmental drivers on endocrine responses in wildlife. Mol. Cell. Endocr. 556, 111737. ( 10.1016/j.mce.2022.111737) [DOI] [PubMed] [Google Scholar]
- 4.Holzer G, Roux N, Laudet V. 2017. Evolution of ligands, receptors and metabolizing enzymes of thyroid signaling. Mol. Cell. Endocr. 459, 5-13. ( 10.1016/j.mce.2017.03.021) [DOI] [PubMed] [Google Scholar]
- 5.Little AG, Kunisue T, Kannan K, Seebacher F. 2013. Thyroid hormone actions are temperature-specific and regulate thermal acclimation in zebrafish (Danio rerio). BMC Biol. 11, 26. ( 10.1186/1741-7007-11-26) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 6.Cossin-Sevrin N, Hsu B-Y, Marciau C, Viblanc VA, Ruuskanen S, Stier A. 2022. Developmental plasticity of mitochondrial aerobic metabolism, growth and survival by prenatal glucocorticoids and thyroid hormones: an experimental test in wild great tits. J. Exp. Biol. 225, jeb243414. ( 10.1242/jeb.243414) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 7.Buisine N, Grimaldi A, Jonchere V, Rigolet M, Blugeon C, Hamroune J, Sachs LM. 2021. Transcriptome and methylome analysis reveal complex cross-talks between thyroid hormone and glucocorticoid signaling at Xenopus metamorphosis. Cells 10, 2375. ( 10.3390/cells10092375) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 8.Duntas LH, Stathatos N. 2015. Toxic chemicals and thyroid function: hard facts and lateral thinking. Rev. Endocr. Metab. Disord. 16, 311-318. ( 10.1007/s11154-016-9331-x) [DOI] [PubMed] [Google Scholar]
- 9.Grubisic M, et al. 2019. Light pollution, circadian photoreception, and melatonin in vertebrates. Sustainability 11, 6400. ( 10.3390/su11226400) [DOI] [Google Scholar]
- 10.Hölker F, et al. 2021. 11 Pressing research questions on how light pollution affects biodiversity. Front. Ecol. Evol. 9, 767177. ( 10.3389/fevo.2021.767177) [DOI] [Google Scholar]
- 11.Loughland I, Little AG, Seebacher F. 2021. DNA methyltransferase 3a mediates developmental thermal plasticity. BMC Biol. 19, 11. ( 10.1186/s12915-020-00942-w) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 12.Husby A. 2022. Wild epigenetics: insights from epigenetic studies on natural populations. Proc. R. Soc. B 289, 20211633. ( 10.1098/rspb.2021.1633) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 13.Martinez ME, Duarte CW, Stohn JP, Karaczyn A, Wu Z, DeMambro VE, Hernandez A. 2020. Thyroid hormone overexposure decreases DNA methylation in germ cells of newborn male mice. Mol. Psychiatr. 25, 915. ( 10.1038/s41380-020-0732-6) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 14.Yonis M, Haim A, Zubidat AE. 2019. Altered metabolic and hormonal responses in male rats exposed to acute bright light-at-night associated with global DNA hypo-methylation. J. Photochem. Photobiol. B Biol. 194, 107-118. ( 10.1016/j.jphotobiol.2019.03.020) [DOI] [PubMed] [Google Scholar]
- 15.Zhu L, Liu Y, Xue X, Yuan C, Wang Z. 2021. BPA's transgenerational disturbance to transcription of ovarian steroidogenic genes in rare minnow Gobiocypris rarus via DNA and histone methylation. Sci. Tot. Environ. 762, 143055. ( 10.1016/j.scitotenv.2020.143055) [DOI] [PubMed] [Google Scholar]
- 16.Olsvik PA, Whatmore P, Penglase SJ, Skjærven KH, d'Auriac MA, Ellingsen S. 2019. Associations between behavioral effects of bisphenol a and DNA methylation in zebrafish embryos. Front. Genet. 10, 184. ( 10.3389/fgene.2019.00184) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 17.Lyko F. 2018. The DNA methyltransferase family: a versatile toolkit for epigenetic regulation. Nat. Rev. Genet. 19, 81-92. ( 10.1038/nrg.2017.80) [DOI] [PubMed] [Google Scholar]
- 18.Stillman B. 2018. Histone modifications: insights into their influence on gene expression. Cell 175, 6-9. ( 10.1016/j.cell.2018.08.032) [DOI] [PubMed] [Google Scholar]
- 19.Wu X, Zhang Y. 2017. TET-mediated active DNA demethylation: mechanism, function and beyond. Nat. Rev. Genet. 18, 517-534. ( 10.1038/nrg.2017.33) [DOI] [PubMed] [Google Scholar]
- 20.Luo C, Hajkova P, Ecker JR. 2018. Dynamic DNA methylation: in the right place at the right time. Science 361, 1336-1340. ( 10.1126/science.aat6806) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 21.Metzger DCH, Schulte PM. 2018. The DNA methylation landscape of stickleback reveals patterns of sex chromosome evolution and effects of environmental salinity. Genome Biol. Evol. 10, 775-785. ( 10.1093/gbe/evy034) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 22.Sävilammi T, Papakostas S, Leder EH, Vøllestad LA, Debes PV, Primmer CR. 2020. Cytosine methylation patterns suggest a role of methylation in plastic and adaptive responses to temperature in European grayling (Thymallus thymallus) populations. Epigenetics 128, 271-288. ( 10.1080/15592294.2020.1795597) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 23.Beaman JE, White CR, Seebacher F. 2016. Evolution of plasticity: mechanistic link between development and reversible acclimation. Trends Ecol. Evol. 31, 237-249. ( 10.1016/j.tree.2016.01.004) [DOI] [PubMed] [Google Scholar]
- 24.Fuks F, Hurd PJ, Deplus R, Kouzarides T. 2003. The DNA methyltransferases associate with HP1 and the SUV39H1 histone methyltransferase. Nucl. Acids Res. 31, 2305-2312. ( 10.1093/nar/gkg332) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 25.Fuks F, Hurd PJ, Wolf D, Nan X, Bird AP, Kouzarides T. 2003. The methyl-CpG-binding protein MeCP2 links DNA methylation to histone methylation. J. Biol. Chem. 278, 4035-4040. ( 10.1074/jbc.m210256200) [DOI] [PubMed] [Google Scholar]
- 26.Catania S, et al. 2020. Evolutionary persistence of DNA methylation for millions of years after ancient loss of a de novo methyltransferase. Cell 180, 263-277. ( 10.1016/j.cell.2019.12.012) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 27.Gao L, et al. 2020. Comprehensive structure-function characterization of DNMT3B and DNMT3A reveals distinctive de novo DNA methylation mechanisms. Nat. Commun. 11, 3355. ( 10.1038/s41467-020-17109-4) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 28.MacDonald JL, Roskams AJ. 2009. Epigenetic regulation of nervous system development by DNA methylation and histone deacetylation. Prog. Neurobiol. 88, 170-183. ( 10.1016/j.pneurobio.2009.04.002) [DOI] [PubMed] [Google Scholar]
- 29.Stevenson TJ. 2017. Environmental and hormonal regulation of epigenetic enzymes in the hypothalamus. J. Neuroendocr. 29, 1–9. ( 10.1111/jne.12471) [DOI] [PubMed] [Google Scholar]
- 30.Hebbar PB, Archer TK. 2003. Chromatin remodeling by nuclear receptors. Chromosoma 111, 495-504. ( 10.1007/s00412-003-0232-x) [DOI] [PubMed] [Google Scholar]
- 31.Kato S, Yokoyama A, Fujiki R. 2011. Nuclear receptor coregulators merge transcriptional coregulation with epigenetic regulation. Trends Biochem. Sci. 36, 272-281. ( 10.1016/j.tibs.2011.01.001) [DOI] [PubMed] [Google Scholar]
- 32.Bartlett AA, Lapp HE, Hunter RG. 2019. Epigenetic mechanisms of the glucocorticoid receptor. Trends Endocr. Metab. 30, 807-818. ( 10.1016/j.tem.2019.07.003) [DOI] [PubMed] [Google Scholar]
- 33.Beato M, Sanchez-Pacheco A. 1996. Interaction of steroid hormone receptors with the transcription initiation complex. Endocr. Rev. 17, 587-609. ( 10.1210/edrv-17-6-587) [DOI] [PubMed] [Google Scholar]
- 34.Santos GM, Fairall L, Schwabe JWR. 2011. Negative regulation by nuclear receptors: a plethora of mechanisms. Trends Endocr. Metabol. 22, 87-93. ( 10.1016/j.tem.2010.11.004) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 35.Holzer G, Markov GV, Laudet V. 2017. Evolution of nuclear receptors and ligand signaling toward a soft key–lock model? Curr. Top. Dev. Biol. 125, 1-38. ( 10.1016/bs.ctdb.2017.02.003) [DOI] [PubMed] [Google Scholar]
- 36.Sato N, Kondo M, Arai K. 2006. The orphan nuclear receptor GCNF recruits DNA methyltransferase for Oct-3/4 silencing. Biochem. Biophys. Res. Commun. 344, 845-851. ( 10.1016/j.bbrc.2006.04.007) [DOI] [PubMed] [Google Scholar]
- 37.Biddie SC, John S. 2014. Minireview: conversing with chromatin: the language of nuclear receptors. Mol. Endocr. 28, 3-15. ( 10.1210/me.2013-1247) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 38.Zhang Y, Wang L. 2011. Nuclear receptor SHP inhibition of Dnmt1 expression via ERRγ. FEBS Lett. 585, 1269-1275. ( 10.1016/j.febslet.2011.03.059) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 39.Crujeiras AB, Carreira MC, Cabia B, Andrade S, Amil M, Casanueva FF. 2015. Leptin resistance in obesity: an epigenetic landscape. Life Sci. 140, 57-63. ( 10.1016/j.lfs.2015.05.003) [DOI] [PubMed] [Google Scholar]
- 40.Dominoni D, Smit JAH, Visser ME, Halfwerk W. 2020. Multisensory pollution: artificial light at night and anthropogenic noise have interactive effects on activity patterns of great tits (Parus major). Environ. Pollut. 256, 113314. ( 10.1016/j.envpol.2019.113314) [DOI] [PubMed] [Google Scholar]
- 41.Borrelle SB, et al. 2020. Predicted growth in plastic waste exceeds efforts to mitigate plastic pollution. Science 369, 1515-1518. ( 10.1126/science.aba3656) [DOI] [PubMed] [Google Scholar]
- 42.Sanders D, Frago E, Kehoe R, Patterson C, Gaston KJ. 2020. A meta-analysis of biological impacts of artificial light at night. Nat. Ecol. Evol. 23, 74-81. ( 10.1038/s41559-020-01322-x) [DOI] [PubMed] [Google Scholar]
- 43.Hooper MJ, Ankley GT, Cristol DA, Maryoung LA, Noyes PD, Pinkerton KE. 2013. Interactions between chemical and climate stressors: a role for mechanistic toxicology in assessing climate change risks. Environ. Toxicol. Chem. 32, 32-48. ( 10.1002/etc.2043) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 44.Besson M, et al. 2020. Anthropogenic stressors impact fish sensory development and survival via thyroid disruption. Nat. Commun. 11, 3614. ( 10.1038/s41467-020-17450-8) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 45.Russart KLG, Nelson RJ. 2018. Light at night as an environmental endocrine disruptor. Physiol. Behav. 190, 82-89. ( 10.1016/j.physbeh.2017.08.029) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 46.Wu NC, Rubin AM, Seebacher F. 2022. Endocrine disruption from plastic pollution and warming interact to increase the energetic cost of growth in a fish. Proc. R. Soc. B 289, 20212077. ( 10.1098/rspb.2021.2077) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 47.Little AG, Seebacher F. 2015. Temperature determines toxicity: bisphenol A reduces thermal tolerance in fish. Environ. Pollut. 197, 84-89. ( 10.1016/j.envpol.2014.12.003) [DOI] [PubMed] [Google Scholar]
- 48.Sutherland WJ, et al. 2021. A 2021 horizon scan of emerging global biological conservation issues. Trends Ecol. Evol. 36, 87-97. ( 10.1016/j.tree.2020.10.014) [DOI] [PubMed] [Google Scholar]
- 49.Chmura HE, Williams CT. 2022. A cross-taxonomic perspective on the integration of temperature cues in vertebrate seasonal neuroendocrine pathways. Horm. Behav. 144, 105215. ( 10.1016/j.yhbeh.2022.105215) [DOI] [PubMed] [Google Scholar]
- 50.Little AG. 2016. A review of the peripheral levels of regulation by thyroid hormone. J. Comp. Physiol. B 186, 677-688. ( 10.1007/s00360-016-0984-2) [DOI] [PubMed] [Google Scholar]
- 51.Laudet V. 2011. The origins and evolution of vertebrate metamorphosis. Curr. Biol. 21, R726-R737. ( 10.1016/j.cub.2011.07.030) [DOI] [PubMed] [Google Scholar]
- 52.Roux N, et al. 2023. The multi-level regulation of clownfish metamorphosis by thyroid hormones. Cell Rep. 42, 112661. ( 10.1016/j.celrep.2023.112661) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 53.Holzer G, Laudet V. 2013. Thyroid hormones and postembryonic development in amniotes. Curr. Top. Dev. Biol. 103, 397-425. ( 10.1016/b978-0-12-385979-2.00014-9) [DOI] [PubMed] [Google Scholar]
- 54.Little AG. 2018. Local regulation of thyroid hormone signaling. Vitam. Horm. 106, 1-17. ( 10.1016/bs.vh.2017.06.004) [DOI] [PubMed] [Google Scholar]
- 55.Cheng S-Y, Leonard JL, Davis PJ. 2010. Molecular aspects of thyroid hormone actions. Endocr. Rev. 31, 139-170. ( 10.1210/er.2009-0007) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 56.Li J, Lin Q, Yoon H-G, Huang Z-Q, Strahl BD, Allis CD, Wong J. 2002. Involvement of histone methylation and phosphorylation in regulation of transcription by thyroid hormone receptor. Mol. Cell. Biol. 22, 5688-5697. ( 10.1128/mcb.22.16.5688) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 57.Fonseca TL, Garcia T, Fernandes GW, Nair TM, Bianco AC. 2021. Neonatal thyroxine activation modifies epigenetic programming of the liver. Nat. Commun. 12, 4446. ( 10.1038/s41467-021-24748-8) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 58.Dahl GE, Evans NP, Thrun LA, Karsch FJ. 1994. A central negative feedback action of thyroid hormones on thyrotropin-releasing hormone secretion. Endocrinology 135, 2392-2397. ( 10.1210/endo.135.6.7988422) [DOI] [PubMed] [Google Scholar]
- 59.Köhrle J. 2000. The deiodinase family: selenoenzymes regulating thyroid hormone availability and action. Cell. Mol. Life Sci. 57, 1853-1863. ( 10.1007/pl00000667) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 60.Davis PJ, Mousa SA, Lin H-Y. 2021. Nongenomic actions of thyroid hormone: the integrin component. Physiol. Rev. 101, 319-352. ( 10.1152/physrev.00038.2019) [DOI] [PubMed] [Google Scholar]
- 61.Raj S, Kyono Y, Sifuentes CJ, Arellanes-Licea EdC, Subramani A, Denver RJ. 2020. Thyroid hormone induces DNA demethylation in Xenopus tadpole brain. Endocrinology 161, bqaa155. ( 10.1210/endocr/bqaa155) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 62.Kyono Y, Sachs LM, Bilesimo P, Wen L, Denver RJ. 2016. Developmental and thyroid hormone regulation of the DNA methyltransferase 3a gene in Xenopus tadpoles. Endocrinology 157, 4961-4972. ( 10.1210/en.2016-1465) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 63.Kyono Y, Subramani A, Ramadoss P, Hollenberg AN, Bonett RM, Denver RJ. 2016. Liganded thyroid hormone receptors transactivate the DNA methyltransferase 3a gene in mouse neuronal cells. Endocrinology 157, 3647-3657. ( 10.1210/en.2015-1529) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 64.Lauby SC, McGowan PO. 2020. Early life variations in temperature exposure affect the epigenetic regulation of the paraventricular nucleus in female rat pups. Proc. R. Soc. B 287, 20201991. ( 10.1098/rspb.2020.1991) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 65.Sui L, Li B-M. 2010. Effects of perinatal hypothyroidism on regulation of reelin and brain-derived neurotrophic factor gene expression in rat hippocampus: role of DNA methylation and histone acetylation. Steroids 75, 988-997. ( 10.1016/j.steroids.2010.06.005) [DOI] [PubMed] [Google Scholar]
- 66.Pawlik-Pachucka E, Budzinska M, Wicik Z, Domaszewska-Szostek A, Owczarz M, Roszkowska-Gancarz M, Gewartowska M, Puzianowska-Kuznicka M. 2018. Age-associated increase of thyroid hormone receptor β gene promoter methylation coexists with decreased gene expression. Endocr. Res. 43, 246-257. ( 10.1080/07435800.2018.1469648) [DOI] [PubMed] [Google Scholar]
- 67.Sittig LJ, Herzing LBK, Xie H, Batra KK, Shukla PK, Redei EE. 2012. Excess folate during adolescence suppresses thyroid function with permanent deficits in motivation and spatial memory. Genes Brain Behav. 11, 193-200. ( 10.1111/j.1601-183x.2011.00749.x) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 68.Schulte PM, Healy TM, Fangue NA. 2011. Thermal performance curves, phenotypic plasticity, and the time scales of temperature exposure. Integr. Comp. Biol. 51, 691-702. ( 10.1093/icb/icr097) [DOI] [PubMed] [Google Scholar]
- 69.Moore JW, Schindler DE. 2022. Getting ahead of climate change for ecological adaptation and resilience. Science 376, 1421-1426. ( 10.1126/science.abo3608) [DOI] [PubMed] [Google Scholar]
- 70.Loughland I, Lau GY, Jolly J, Seebacher F. 2022. Rates of warming impact oxidative stress in zebrafish (Danio rerio). J. Exp. Biol. 225, 243740. ( 10.1242/jeb.243740) [DOI] [PubMed] [Google Scholar]
- 71.de Bruijn R, Romero LM. 2018. The role of glucocorticoids in the vertebrate response to weather. Gen. Comp. Endocr. 269, 11-32. ( 10.1016/j.ygcen.2018.07.007) [DOI] [PubMed] [Google Scholar]
- 72.Zimmer C, Taff CC, Ardia DR, Rose AP, Aborn DA, Johnson LS, Vitousek MN. 2020. Environmental unpredictability shapes glucocorticoid regulation across populations of tree swallows. Scient. Rep. 10, 13682. ( 10.1038/s41598-020-70161-4) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 73.Perez MF, Lehner B. 2019. Intergenerational and transgenerational epigenetic inheritance in animals. Nat. Cell Biol. 21, 143-151. ( 10.1038/s41556-018-0242-9) [DOI] [PubMed] [Google Scholar]
- 74.Cauwenbergh OV, Serafino AD, Tytgat J, Soubry A. 2020. Transgenerational epigenetic effects from male exposure to endocrine-disrupting compounds: a systematic review on research in mammals. Clin. Epigen. 12, 1-23. ( 10.1186/s13148-020-00845-1) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 75.Bradshaw WE, Holzapfel CM. 2010. Light, time, and the physiology of biotic response to rapid climate change in animals. Annu. Rev. Physiol. 72, 147-166. ( 10.1146/annurev-physiol-021909-135837) [DOI] [PubMed] [Google Scholar]
- 76.Tolla E, Stevenson TJ. 2020. Photoperiod-induced changes in hypothalamic de novo DNA methyltransferase expression are independent of triiodothyronine in female Siberian hamsters (Phodopus sungorus). Gen. Comp. Endocr. 299, 113604. ( 10.1016/j.ygcen.2020.113604) [DOI] [PubMed] [Google Scholar]
- 77.Little AG. 2021. Thyroid hormone regulation of thermal acclimation in ectotherms: physiological mechanisms and ecoevolutionary implications. Mol. Cell. Endocr. 530, 111285. ( 10.1016/j.mce.2021.111285) [DOI] [PubMed] [Google Scholar]
- 78.Viitaniemi HM, Verhagen I, Visser ME, Honkela A, van Oers K, Husby A. 2019. Seasonal variation in genome-wide DNA methylation patterns and the onset of seasonal timing of reproduction in great tits. Genome Biol. Evol. 11, 970-983. ( 10.1093/gbe/evz044) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 79.Stevenson TJ, Prendergast BJ. 2013. Reversible DNA methylation regulates seasonal photoperiodic time measurement. Proc. Natl Acad. Sci. USA 110, 16 651-16 656. ( 10.1073/pnas.1310643110) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 80.Zak MA, Regish AM, McCormick SD, Manzon RG. 2017. Exogenous thyroid hormones regulate the activity of citrate synthase and cytochrome c oxidase in warm- but not cold-acclimated lake whitefish (Coregonus clupeaformis). Gen. Comp. Endocr. 247, 215-222. ( 10.1016/j.ygcen.2017.02.005) [DOI] [PubMed] [Google Scholar]
- 81.Little AG, Seebacher F. 2013. Thyroid hormone regulates muscle function during cold acclimation in zebrafish (Danio rerio). J. Exp. Biol. 216, 3514-3521. ( 10.1242/jeb.089136) [DOI] [PubMed] [Google Scholar]
- 82.Metzger DCH, Schulte PM. 2017. Persistent and plastic effects of temperature on DNA methylation across the genome of threespine stickleback (Gasterosteus aculeatus). Proc. R. Soc. B 284, 20171667. ( 10.1098/rspb.2017.1667) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 83.Ryu T, Veilleux HD, Donelson JM, Munday PL, Ravasi T. 2018. The epigenetic landscape of transgenerational acclimation to ocean warming. Nat. Clim. Change 8, 504-509. ( 10.1038/s41558-018-0159-0) [DOI] [Google Scholar]
- 84.McCaw BA, Stevenson TJ, Lancaster LT. 2020. Epigenetic responses to temperature and climate. Integr. Comp. Biol. 60, 1469-1480. ( 10.1093/icb/icaa049) [DOI] [PubMed] [Google Scholar]
- 85.Marsh AG, Pasqualone AA. 2014. DNA methylation and temperature stress in an Antarctic polychaete, Spiophanes tcherniai. Front. Physiol. 5, 173. ( 10.3389/fphys.2014.00173/abstract) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 86.Wang X, Li A, Wang W, Que H, Zhang G, Li L. 2021. DNA methylation mediates differentiation in thermal responses of Pacific oyster (Crassostrea gigas) derived from different tidal levels. Heredity 126, 10-22. ( 10.1038/s41437-020-0351-7) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 87.Venney CJ, Wellband KW, Normandeau E, Houle C, Garant D, Audet C, Bernatchez L. 2022. Thermal regime during parental sexual maturation, but not during offspring rearing, modulates DNA methylation in brook charr (Salvelinus fontinalis). Proc. R. Soc. B 289, 20220670. ( 10.1098/rspb.2022.0670) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 88.Campos C, Valente L, Conceição L, Engrola S, Fernandes J. 2013. Temperature affects methylation of the myogenin putative promoter, its expression and muscle cellularity in Senegalese sole larvae. Epigenetics 8, 389-397. ( 10.4161/epi.24178) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 89.Paine RT, Tegner MJ, Johnson EA. 1998. Compounded perturbations yield ecological surprises. Ecosystems 1, 535-545. ( 10.1007/s100219900049) [DOI] [Google Scholar]
- 90.Buma B, Wessman CA. 2012. Differential species responses to compounded perturbations and implications for landscape heterogeneity and resilience. Forest Ecol. Mange. 266, 25-33. ( 10.1016/j.foreco.2011.10.040) [DOI] [Google Scholar]
- 91.LeRoy A, Seebacher F. 2020. Mismatched light and temperature cues disrupt locomotion and energetics via thyroid-dependent mechanisms. Conserv. Physiol. 8, coaa051. ( 10.1093/conphys/coaa051) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 92.West AC, Smith L, Ray DW, Loudon ASI, Brown TM, Bechtold DA. 2017. Misalignment with the external light environment drives metabolic and cardiac dysfunction. Nat. Commun. 8, 417. ( 10.1038/s41467-017-00462-2) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 93.Murray KO, Clanton TL, Horowitz M. 2022. Epigenetic responses to heat: from adaptation to maladaptation. Exp. Physiol. 107, 1144-1158. ( 10.1113/ep090143) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 94.Weyrich A, Lenz D, Jeschek M, Chung TH, Rübensam K, Göritz F, Jewgenow K, Fickel J. 2016. Paternal intergenerational epigenetic response to heat exposure in male wild guinea pigs. Mol. Ecol. 25, 1729-1740. ( 10.1111/mec.13494) [DOI] [PubMed] [Google Scholar]
- 95.Kupprat F, Kloas W, Krüger A, Schmalsch C, Hölker F. 2021. Misbalance of thyroid hormones after two weeks of exposure to artificial light at night in Eurasian perch Perca fluviatilis. Conserv. Physiol. 9, coaa124. ( 10.1093/conphys/coaa124) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 96.Falchi F, Cinzano P, Duriscoe D, Kyba CCM, Elvidge CD, Baugh K, Portnov BA, Rybnikova NA, Furgoni R. 2016. The new world atlas of artificial night sky brightness. Sci. Adv. 2, e1600377-27. ( 10.1126/sciadv.1600377) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 97.Gaston KJ. 2018. Lighting up the nighttime. Science 362, 744-746. ( 10.1126/science.aau8226) [DOI] [PubMed] [Google Scholar]
- 98.Kyba CCM, et al. 2017. Artificially lit surface of Earth at night increasing in radiance and extent. Sci. Adv. 3, e1701528. ( 10.1126/sciadv.1701528) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 99.Seto KC, Güneralp B, Hutyra LR. 2012. Global forecasts of urban expansion to 2030 and direct impacts on biodiversity and carbon pools. Proc. Natl Acad. Sci. USA 109, 16 083-16 088. ( 10.1073/pnas.1211658109) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 100.Falcón J, Torriglia A, Attia D, Viénot F, Gronfier C, Behar-Cohen F, Martinsons C, Hicks D. 2020. Exposure to artificial light at night and the consequences for flora, fauna, and ecosystems. Front. Neurosci. 14, 602796. ( 10.3389/fnins.2020.602796) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 101.Miner KA, Huertas M, Aspbury AS, Gabor CR. 2021. Artificial light at night alters the physiology and behavior of western mosquitofish (Gambusia affinis). Front. Ecol. Evol. 9, 617063. ( 10.3389/fevo.2021.617063) [DOI] [Google Scholar]
- 102.Zhang H, et al. 2020. Constant light exposure causes oocyte meiotic defects and quality deterioration in mice. Environ. Pollut. 267, 115467. ( 10.1016/j.envpol.2020.115467) [DOI] [PubMed] [Google Scholar]
- 103.Giannetto A, Nagasawa K, Fasulo S, Fernandes JMO. 2013. Influence of photoperiod on expression of DNA (cytosine-5) methyltransferases in Atlantic cod. Gene 519, 222-230. ( 10.1016/j.gene.2013.02.028) [DOI] [PubMed] [Google Scholar]
- 104.Michelangeli M, Martin JM, Pinter-Wollman N, Ioannou CC, McCallum ES, Bertram MG, Brodin T. 2022. Predicting the impacts of chemical pollutants on animal groups. Trends Ecol. Evol. 37, 789-802. ( 10.1016/j.tree.2022.05.009) [DOI] [PubMed] [Google Scholar]
- 105.Landrigan PJ, et al. 2023. The Minderoo-Monaco Commission on Plastics and Human Health. Ann. Glob. Health 89, 23. ( 10.5334/aogh.4056) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 106.Caporale N, et al. 2022. From cohorts to molecules: adverse impacts of endocrine disrupting mixtures. Science 375, eabe8244. ( 10.1126/science.abe8244) [DOI] [PubMed] [Google Scholar]
- 107.Zhang Y-F, Ren X-M, Li Y-Y, Yao X-F, Li C-H, Qin Z-F, Guo L-H. 2018. Bisphenol A alternatives bisphenol S and bisphenol F interfere with thyroid hormone signaling pathway in vitro and in vivo. Environ. Pollut. 237, 1072-1079. ( 10.1016/j.envpol.2017.11.027) [DOI] [PubMed] [Google Scholar]
- 108.Rubin AM, Seebacher F. 2022. Bisphenols impact hormone levels in animals: a meta-analysis. Sci. Tot. Environ. 828, 154533. ( 10.1016/j.scitotenv.2022.154533) [DOI] [PubMed] [Google Scholar]
- 109.Zhang D, Zhou E, Yang Z. 2017. Waterborne exposure to BPS causes thyroid endocrine disruption in zebrafish larvae. PLoS ONE 12, e0176927. ( 10.1371/journal.pone.0176927) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 110.Moriyama K, et al. 2002. Thyroid hormone action is disrupted by bisphenol a as an antagonist. J. Clin. Endocr. Metab. 87, 5185-5190. ( 10.1210/jc.2002-020209) [DOI] [PubMed] [Google Scholar]
- 111.Zhao X, Ren X, Ren B, Luo Z, Zhu R. 2016. Life-cycle exposure to BDE-47 results in thyroid endocrine disruption to adults and offsprings of zebrafish (Danio rerio). Environ. Toxicol. Pharmacol. 48, 157-167. ( 10.1016/j.etap.2016.10.004) [DOI] [PubMed] [Google Scholar]
- 112.Lu L, Zhan T, Ma M, Xu C, Wang J, Zhang C, Liu W, Zhuang S. 2018. Thyroid disruption by bisphenol S analogues via thyroid hormone receptor β: in vitro, in vivo, and molecular dynamics simulation study. Environ. Sci. Technol. 52, 6617-6625. ( 10.1021/acs.est.8b00776) [DOI] [PubMed] [Google Scholar]
- 113.Pelaia T, Rubin AM, Seebacher F. 2023. Bisphenol S reduces locomotor performance and modifies muscle protein levels but not mitochondrial bioenergetics in adult zebrafish. Aquat. Toxicol. 257, 106440. ( 10.1016/j.aquatox.2023.106440) [DOI] [PubMed] [Google Scholar]
- 114.Li R, Yang L, Han J, Zou Y, Wang Y, Feng C, Zhou B. 2021. Early-life exposure to tris (1,3-dichloro-2-propyl) phosphate caused multigenerational neurodevelopmental toxicity in zebrafish via altering maternal thyroid hormones transfer and epigenetic modifications. Environ. Pollut. 285, 117471. ( 10.1016/j.envpol.2021.117471) [DOI] [PubMed] [Google Scholar]
- 115.Chung FF-L, Herceg Z. 2020. The promises and challenges of toxico-epigenomics: environmental chemicals and their impacts on the epigenome. Environ. Health Persp. 128, 015001. ( 10.1289/ehp6104) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 116.Kroon J, Pereira AM, Meijer OC. 2020. Glucocorticoid sexual dimorphism in metabolism: dissecting the role of sex hormones. Trends Endocr. Metab. 31, 357-367. ( 10.1016/j.tem.2020.01.010) [DOI] [PubMed] [Google Scholar]
- 117.Sireeni J, Bakker N, Jaikumar G, Obdam D, Slabbekoorn H, Tudorache C, Schaaf M. 2020. Profound effects of glucocorticoid resistance on anxiety-related behavior in zebrafish adults but not in larvae. Gen. Comp. Endocr. 292, 113 461-11 3468. ( 10.1016/j.ygcen.2020.113461) [DOI] [PubMed] [Google Scholar]
- 118.Turecki G, Meaney MJ. 2016. Effects of the social environment and stress on glucocorticoid receptor gene methylation: a systematic review. Biol. Psychol. 79, 87-96. ( 10.1016/j.biopsych.2014.11.022) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 119.Shimizu N, et al. 2011. Crosstalk between glucocorticoid receptor and nutritional sensor mTOR in skeletal muscle. Cell Metabol. 13, 170-182. ( 10.1016/j.cmet.2011.01.001) [DOI] [PubMed] [Google Scholar]
- 120.Schmitz R, Schultz MD, Lewsey MG, OMalley RC, Ulrich MA, Libiger OJ, Schork NJ, Ecker JR. 2011. Transgenerational epigenetic instability is a source of novel methylation variants. Science 334, 369-373. ( 10.1126/science.1208144) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 121.Garzón MB, Robson TM, Hampe A. 2019. ΔTraitSDMs: species distribution models that account for local adaptation and phenotypic plasticity. New Phytol. 222, 1757-1765. ( 10.1111/nph.15716) [DOI] [PubMed] [Google Scholar]
- 122.Wolfe BW, Fitzgibbon QP, Semmens JM, Tracey SR, Pecl GT. 2020. Physiological mechanisms linking cold acclimation and the poleward distribution limit of a range-extending marine fish. Conserv. Physiol. 8, coaa045. ( 10.1093/conphys/coaa045) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 123.Seebacher F, Narayan E, Rummer JL, Tomlinson S, Cooke SJ. 2023. How can physiology best contribute to wildlife conservation in a warming world? Conserv. Physiol. 11, coad038. ( 10.1093/conphys/coad038) [DOI] [PMC free article] [PubMed] [Google Scholar]
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