KEY RESOURCES TABLE
REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
PE I-Ab Mycobacterium tuberculosis ESAT-64-1 tetramer | NIH Tetramer Core Facility | https://tetramer.yerkes.emory.edu/ |
APC I-Ab Influenza A 2W1S tetramer | NIH Tetramer Core Facility | https://tetramer.yerkes.emory.edu/ |
FITC anti-mouse CD45 | Biolegend | Cat# 147709; RRID:AB_2563542 |
BUV395 anti-mouse CD4 | BD Biosciences | Cat# 563790; RRID:AB_2738426 |
BV510 anti-mouse/human CD44 | Biolegend | Cat# 103043; RRID:AB_2561391 |
PE anti-mouse P2X7 | Biolegend | Cat# 148703; RRID:AB_2650951 |
BV786 anti-mouse P2X7 | BD Biosciences | Cat# 744724; RRID:AB_2742436 |
BV711 anti-mouse/human KLRG1 | Biolegend | Cat# 138427; RRID:AB_2629721 |
BV786 anti-mouse CX3CR1 | Biolegend | Cat# 149029; RRID:AB_2565938 |
PE/Cyanine7 anti-mouse CD69 | Biolegend | Cat# 104511; RRID:AB_493565 |
BV650 anti-mouse CXCR3 | Biolegend | Cat# 126531; RRID:AB_2563160 |
PE anti-mouse/human Ki-67 | Biolegend | Cat# 151209; RRID:AB_2716014 |
BV650 anti-mouse IFN-y | Biolegend | Cat# 505831; RRID:AB_11142685 |
PE-CF594 anti-mouse FOXP3 | BD Biosciences | Cat# 562466; RRID:AB_11151905 |
PerCP-Cyanine5.5 anti-mouse T-bet | Biolegend | Cat# 644805; RRID:AB_1595593 |
BV421 anti-mouse CD45.1 | Tongo Biosciences | Cat# 75-0453-U025; RRID:AB_2621949 |
APC anti-mouse CD45.2 | Biolegend | Cat# 109813; RRID:AB_389210 |
Percp anti-mouse CD45.2 | Biolegend | Cat# 109825; RRID:AB_893351 |
BV421 anti-mouse/human CD4 | BD Biosciences | Cat# 562425; RRID:AB_11154221 |
APC-Cyanine7 anti-mouse/human CD44 | Biolegend | Cat# 103027; RRID:AB_830784 |
PE anti-mouse-human CXCR3 | BioLegend | Cat# 353705; RRID:AB_10959652 |
PE-Cyanine7 anti-human Ki-67 | BioLegend | Cat# 350525; RRID:AB_2562871 |
Anti-mouse S100A9 | Bio-Techne | Cat# AF2065; RRID:AB_2184263 |
PE anti-mouse CD4 | Biolegend | Cat# 100407; RRID:AB_312693 |
FITC anti-rabbit antibody | BD Biosciences | Cat# 554020; RRID:AB_395212 |
APC anti-mouse IFN-y | Biolegend | Cat# 505809; RRID:AB_315403 |
InVivoMAb anti-mouse CD4 | BioXCell | Cat# BE0003-1; RRID:AB_1107636 |
InVivoMAb anti-mouse CXCR3 (CD183) | BioXCell | Cat# BE0249; RRID:AB_2687730 |
Anti-ARTC2.2 Treg-protector nanobodie | Biolegend | Cat# 149802; RRID:AB_2565485 |
Pe/Cyanine5 anti-mouse CD69 | Biolegend | Cat# 104510; RRID:AB_313113 |
BV785 anti-mouse/human CD44 | Biolegend | Cat# 103041; RRID:AB_11218802 |
Bacterial and virus strains | ||
Mycobacterium bovis MP287/03 | José Soares Ferreira Neto, PhD | Grown in house |
Mycobacterium tuberculosis H37Rv | American Type Culture Collection | Grown in house |
Influenza A PR8/34 | Jie Sun, PhD | Grown in house |
Influenza A PR8/2W | Ryan Langlois, PhD | Grown in house |
Chemicals, peptides, and recombinant proteins | ||
Middlebrook 7H9 medium | Becton Dickinson | Cat# 271310 |
Middlebrook 7H10 Agar | Becton Dickinson | Cat# 262710 |
Middlebrook ADC Growth Supplement | Sigma-Aldrich | Cat# M0553-1VL |
Middlebrook OADC Growth Supplement | Sigma-Aldrich | Cat# M0678-1VL |
RPMI 1640 Medium | Gibico | Cat# 11875093 |
Ketamine | Syntec | N/A |
Xylazine | Syntec | N/A |
CFSE | Abcam | Cat# ab113853 |
CellTrace Violet | Thermo Fisher Scientific | Cat# C34557 |
Fingolimod (FTY720) | Selleck Chemicals | Cat# S5002 |
Collagenase type IV | Gibico | Cat# 17104019 |
ACK Lysing Buffer | This paper | Made in house |
PBS (Phosphate Buffered Saline) 1x | Corning | Cat# 21-040-CV |
ProLong Gold antifade | Invitrogen | Cat# P36934 |
Bovine serum albumin (BSA) | Sigma-Aldrich | Cat# A9418 |
Fetal Bovine Serum | Gibico | Cat# A52567-01 |
Critical commercial assays | ||
EasySep Mouse CD4+ T cell isolation Kit | Stem Cell | Cat# 19765 |
True Nuclear Transcription Factor Buffer Set | Biolegend | Cat# 424401 |
BD Cytofix/Cytoperm Plus | BD Biosciences | Cat# 554715 |
RNA isolation RNeasy Kits | QIAGEN | Cat# 74004 |
Deposited data | ||
Raw and analyzed data | This paper | GEO: GSE244194 |
Experimental models: Organisms/strains | ||
C57BL/6 mice | Jackson Laboratory | Cat# 000664; RRID:IMSR_JAX:000664 |
CD45.1 congenic mice | Jackson Laboratory | Cat# 002014; RRID:IMSR_JAX:002014 |
Cd4−/− mice | Jackson Laboratory | Cat# 002663; RRID:IMSR_JAX:002663 |
P2rx7−/− mice | Jackson Laboratory | Cat# 005576; RRID:IMSR_JAX:005576 |
CD4-Cre | Jackson Laboratory | Cat# 022071; RRID:IMSR_JAX:022071 |
P2rx7 flox/flox | György Haskó - Columbia University | N/A |
Oligonucleotides | ||
PR8-NP fwd: 5′-GATTGGTGGAATTGGACGAT-3′ | Thermo Fisher Scientific | N/A |
PR8-NP rev: 5′-AGAGCACCATTCTCTCTATT-3′ | Thermo Fisher Scientific | N/A |
Software and algorithms | ||
FlowJo 10.7.1 | BD Biosciences | https://www.flowjo.com/; RRID:SCR_008520 |
Prism 9 | Graphpad Software | https://www.graphpad.com/; RRID:SCR_002798 |
Fiji Java 8 | ImageJ | https://github.com/imagej/ImageJ.git; RRID:SCR_002285 |
Biorender | Biorender | https://Biorender.com; RRID:SCR_018361 |
BGI | N/A | https://www.bgi.com/global/dr-tom/; RRID:SCR_011114 |