Table 1.
Targeted genes for NanoString expression assay.
| Group | Gene name | SwissProt annotation | Transcript ID | Gene ID |
|---|---|---|---|---|
| PRR | EsPGRP1a | PGRP1_HUMAN2 | g32443.t1 | cluster_20358 |
| EsPGRP2 | PGRP1_HUMAN | TR392087|c0_g2_i3|m.10497 | cluster_4678 | |
| EsPGRP3 | PGRP1_BOSIN | c90996_f1p3_2225 | cluster_12168 | |
| EsPGRP4a | PGRP1_CAMDR | c13944_f1p1_1948 | cluster_11708 | |
| PGRP1_CAMDR2 | g32454.t1 | cluster_11708 | ||
| EsPGRP5 | PGSC2_DROS | c202596_f11p9_1744 | cluster_2407 | |
| PGRP2_HOLDI | g26249.t1 | cluster_2407 | ||
| EsTLR1 | TOLL8_DROME | TR148504|c1_g1_i1|m.29453 | cluster_824 | |
| TOLL8_DROME2 | c72113_f1p0_2169 | cluster_824 | ||
| EsTLR2 | TLR21_CHICK | TR395607|c0_g1_i2|m.29770 | cluster_4721 | |
| EsTLR3 | TLR22_CHICK | TR272699|c0_g1_i1|m.41803 | cluster_2800 | |
| EsTLR4 | TOLL_DROME2 | g48290.t1 | cluster_22290 | |
| EsTLR5b | ALS_MOUSE | g91545.t1 | cluster_27922 | |
| EsTLR6a | TLR6_MOUSE | g31247.t1 | cluster_14365 | |
| EsGalectin1 | LEG1_HAECO | TR633522|c3_g2_i1|m.28191 | cluster_8370 | |
| EsGalectin2b | LEG4_MOUSE | c95712_f1p2_3429 | cluster_16338 | |
| LYSM2a | LYSM2_DANRE | g11540.t1 | cluster_17730 | |
| LYSM3 | LYSM3_CHICK | TR298744|c6_g1_i1|m.44844 | cluster_3208 | |
| Effector enzyme | EsSOD | SODC_BOMMO | TR132802|c5_g2_i1|m.7128 | cluster_586 |
| SODC2a | SODC_MOUSE | g77040.t1 | cluster_13902 | |
| SODC3a | SODC_SCHPO | isotig01040|m.9077 | cluster_7124 | |
| SODC_SCHPO2 | c124720_f1p94_1276 | cluster_7124 | ||
| SODMb | SODM_RAT | c123132_f1p3_1433 | cluster_11217 | |
| SODM_CHAFE | g35029.t1 | cluster_20684 | ||
| HSP71 | HSP7C_RAT | c35333_f1p15_1997 | cluster_11716 | |
| HSP7C_RAT2 | c36410_f1p4_2104 | cluster_11716 | ||
| HSP7C_ICTPU | c196330_f1p3_1314 | cluster_11716 | ||
| HSP90 | HS90A_RABIT | g6318.t1 | cluster_24185 | |
| Signaling | MYD88_1 | MYD88_PANTR | c98230_f1p1_1673 | cluster_16435 |
| MYD88_2b | MYD88_PANTR2 | c141455_f3p1_1351 | cluster_530 | |
| EsIRAK4 | IRAK4_HUMAN | TR101118|c2_g2_i2|m.40331 | cluster_23 | |
| IRAK4_2 | IRAK4_BOVIN | c8160_f6p3_2517 | cluster_15833 | |
| PBL6_ARATH | g88227.t1 | cluster_15833 | ||
| TRAF2 | TRAF2_HUMAN | g53219.t1 | cluster_5541 | |
| TRAF3 | TRAF3_MOUSE | c82312_f1p0_2491 | cluster_15867 | |
| TRAF4 | TRAF4_MOUSE | TR683727|c9_g1_i5|m.7586 | cluster_9167 | |
| TRAF4_MOUSE2 | c43236_f1p0_1788 | cluster_9167 | ||
| EsTRAF6 | TRAF6_BOVIN1 | g38415.t1 | cluster_4580 | |
| TRAF6_BOVIN2 | TR385091|c1_g1_i2|m.21623 | cluster_4580 | ||
| M3K7_PONAB | c55278_f2p1_2609 | cluster_16222 |
a Probes were unsuccessful in the NanoString assay.
b Not targeted for NanoString analysis.