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. 2024 Jan 15;27(2):108879. doi: 10.1016/j.isci.2024.108879
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Goat-anti human IgG-Fc Bethyl Laboratories A80-104A
MSD SULFO-TAG Labeled Anti-Human Antibody (Goat) MSD R32AJ-1
Anti-human CD45 PerCP/Cy5.5 BioLegend 304028
Anti-mouse CD45 Dazzle594 BioLegend 103146
Anti-human CD3 BV650 BioLegend 317324
Anti-human CD4 AF700 BioLegend 357418
Anti-human CD8 BV785 BioLegend 344740
Anti-human CD19 BV421 BioLegend 302234
Anti-human CD27 BV711 BioLegend 356430
Anti-human CD62L BV510 BioLegend 304844
Anti-human PD1 PE BD 557946
Anti-human TIM-3 APC/Cyanine7 BioLegend 345026
Anti-human CD45RA PerCP/Cyanine5.5 BioLegend 304122
Anti-human CD45RO PE/Cyanine7 BioLegend 304230

Bacterial and virus strains

pHAGE-Ef1a-IRES-WPRE This paper N/A

Biological samples

Leukopak StemCell 70500
Apheresis leukoreduction collars obtained from the blood bank of the Brigham and Women's Hospital under DFCI approved IRB protocol #14-343 N/A

Chemicals, peptides, and recombinant proteins

Polyethylenimine, PEI
Lenti-X™ Concentrator Clontech 631231
Ficoll-Paque-PLUS GE Healthcare 45001750
Gentamicin Gibco 15750060
IL-21 Miltenyi Biotec 130-095-784
IL-7 Miltenyi Biotec 130-095-363
IL-15 Miltenyi Biotec 130-095-765
D-luciferin potassium salt Promega E1605

Critical commercial assays

Zombie Yellow™ Fixable Viability Kit BioLegend 423104
Tumor Dissociation Kit Miltenyi Biotec 130-095-929
CD34 microbead kit Miltenyi Biotec 130-100-453
CD4 microbeads Miltenyi Biotec 130-097-048
CD8 microbeads Miltenyi Biotec 130-097-057
TransAct kit Miltenyi Biotec 130-111-160

Deposited data

scRNAseq data This paper GSE210664
Kevin Bi et al. Single Cell Portal Single Cell Portal: https://singlecell.broadinstitute.org/single_cell/study/SCP1288/tumor-and-immune-reprogramming-during-immunotherapy-in-advanced-renal-cell-carcinoma#study-summary
Codes This paper https://doi.org/10.5281/zenodo.7274663
Supplementary tables This paper; Zenodo Data Table S2∼10; https://doi.org/10.5281/zenodo.10456704

Software and algorithms

Cellranger 10x genomics https://www.10xgenomics.com/support/software/cell-ranger
Seurat Hao et al.99 https://satijalab.org/seurat/
harmony Korsunsky et al.100 https://portals.broadinstitute.org/harmony/index.html
CellChat Jin et al.64 https://github.com/sqjin/CellChat
Velocyto La Manno et al.50 https://velocyto.org/