REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
AKT | CST | Cat #4691S |
p-AKT | CST | Cat #S473 |
AMPK | CST | Cat #2532S |
p-AMPK | CST | Cat #2535S |
MUP1 | Abcam | Cat #ab95198 |
MUP11 | Thermo Fisher Scientific | Cat #PIPA5112879 |
MUP12 | Thermo Fisher Scientific | Cat #NB125147 |
GAPDH | CST | Cat #2118S |
p-AKT | CST | Cat #S473 |
AMPK | CST | Cat #2532S |
p-AMPK | CST | Cat #2535S |
MUP1 | Abcam | Cat #ab95198 |
MUP11 | Thermo Fisher Scientific | Cat #PIPA5112879 |
MUP12 | Thermo Fisher Scientific | Cat #NB125147 |
GAPDH | CST | Cat #2118S |
Chemicals, peptides, and recombinant proteins | ||
High-fat diet (60% kcal from Fat) | Research Diets Inc. | Cat #D12492i |
IVISbrite D-Luciferin | Revvity | Cat #770504 |
Humulin-R | NDC | Cat #0002-8215-17 (HI-213) |
Insulin, Cell culture | Roche | Cat #11376497001 |
Dextrose Anydrous | VWR | Cat #BDH9230 |
Qiazol | Qiagen | Cat #79306 |
DMEM Low Glucose | Invitrogen | Cat #11885-084 |
DMEM High Glucose | Thermo Fisher Scientific | Cat #1960-069 |
Dexamethasone | Sigma | Cat #D-4902 |
Fetal Bovine Serum | Corning | Cat #35-010-CV |
ITS mix | Sigma | Cat #I3146 |
Indomethacin | Sigma | Cat #I7378 |
Linoleic-acid Albumin | Sigma | Cat #L9530 |
L-Ascorbic Acid Phosphate | Sigma | Cat #A8960 |
IBMX | Sigma | Cat #I5879 |
Penicillin/Streptomycin | Gibco | Cat #504284 |
Trypsin EDTA 0.25% | VWR | Cat #02-0154-0100 |
PBS | VWR | Cat #E504 |
Smooth Muscle Cell Growth Medium 2 and its Supplement Mix | Promocell | Cat #C-22062 |
Pyruvate | Gibco | Cat #11360 |
Glutamax | Gibco | Cat #35050 |
L-Proline | Sigma | Cat #D49752 |
T3 | Sigma | Cat #T6397 |
Rosiglitazone | Sigma | Cat #R2408-10MG |
TrypLE Express Enzyme (1X), phenol | Thermo Fisher Scientific | Cat #12605010 |
Critical commercial assays | ||
Insulin ELISA | Millipore | Cat #EZRMI-13K |
Adiponectin ELISA | Sigma | Cat #RAB1115-1KT |
FGF21 ELISA | BioVendor R&D | Cat #RD291108200R |
Qiagen RNeasy Plus Mini Kit | Qiagen | Cat #74134 |
Agilent BioAnalyzer RNA Nano Kit | Agilent Technologies | Cat #5067-1511 |
Invitrogen Qubit RNA HS Assay Kit | Thermo Fisher Scientific | Cat #Q32852 |
NEBNext Ultra II Directional RNA Library Prep Kit | NEB | Cat #E7760L |
NEBNext Poly (A) mRNA Magnetic Isolation Module | NEB | Cat #E7490 |
Agilent BioAnalyzer HS DNA Kit | Agilent | Cat #5067-4626 |
Invitrogen Qubit DNA HS Assay Kit | Thermo Fisher Scientific | Cat #Q32854 |
Deposited data | ||
Bulk RNA-sequencing data (Liver) | Submitted on NCBI GEO database (https://www.ncbi.nlm.nih.gov/geo/) | Accession number: GSE250078 |
Experimental models: Cell lines | ||
AgeX-NP88 cell line | AgeX Therapeutics | Not Applicable |
Experimental models: Organisms/strains | ||
FGF21 Knock-out mice | Jackson Laboratory | B6.129Sv(Cg)-Fgf21tm1.1Djm/ |
Wild-type mice | Charles River laboratories | C57BL/6J |
Luciferase Transgenic mice | Jackson Laboratory | FVB-Tg [CAG-luc,-GFP] L2G85Chco/J |
NSG mice | Jackson Laboratory | NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ |
Oligonucleotides | ||
Oligonucleotides | This paper: Table S1 | |
Software and algorithms | ||
GraphPad Prism 7 | GraphPad Software | https://www.graphpad.com |
R version 4.2.2 | R Development Core Team, 2011 | https://www.r-project.org/ |
Fastp version 0.20.0 | Shifu Chen | Shifu Chen. 2023. Ultrafast one-pass FASTQ data preprocessing, quality control, and deduplication using fastp. iMeta 2: e107. https://doi.org/10.1002/imt2.10778 |
Kallisto version 0.46.1 | Pachter Lab | Nicolas L Bray, Harold Pimentel, Páll Melsted and Lior Pachter, Near-optimal probabilistic RNA-seq quantification, Nature Biotechnology 34, 525–527 (2016), https://doi.org/10.1038/nbt.351979 |
clusterProfiler version 4.6.0 | Guangchuang Yu | Yu G, Wang L, Han Y and He Q∗. clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS: A Journal of Integrative Biology. 2012, 16(5):284-28780 |
Image J | NIH | Rasband, W.S., ImageJ, U. S. National Institutes of Health, Bethesda, Maryland, USA, https://imagej.net/ij/, 1997-2018.81 |