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. 2024 Jan 17;27(2):108927. doi: 10.1016/j.isci.2024.108927
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

AKT CST Cat #4691S
p-AKT CST Cat #S473
AMPK CST Cat #2532S
p-AMPK CST Cat #2535S
MUP1 Abcam Cat #ab95198
MUP11 Thermo Fisher Scientific Cat #PIPA5112879
MUP12 Thermo Fisher Scientific Cat #NB125147
GAPDH CST Cat #2118S
p-AKT CST Cat #S473
AMPK CST Cat #2532S
p-AMPK CST Cat #2535S
MUP1 Abcam Cat #ab95198
MUP11 Thermo Fisher Scientific Cat #PIPA5112879
MUP12 Thermo Fisher Scientific Cat #NB125147
GAPDH CST Cat #2118S

Chemicals, peptides, and recombinant proteins

High-fat diet (60% kcal from Fat) Research Diets Inc. Cat #D12492i
IVISbrite D-Luciferin Revvity Cat #770504
Humulin-R NDC Cat #0002-8215-17 (HI-213)
Insulin, Cell culture Roche Cat #11376497001
Dextrose Anydrous VWR Cat #BDH9230
Qiazol Qiagen Cat #79306
DMEM Low Glucose Invitrogen Cat #11885-084
DMEM High Glucose Thermo Fisher Scientific Cat #1960-069
Dexamethasone Sigma Cat #D-4902
Fetal Bovine Serum Corning Cat #35-010-CV
ITS mix Sigma Cat #I3146
Indomethacin Sigma Cat #I7378
Linoleic-acid Albumin Sigma Cat #L9530
L-Ascorbic Acid Phosphate Sigma Cat #A8960
IBMX Sigma Cat #I5879
Penicillin/Streptomycin Gibco Cat #504284
Trypsin EDTA 0.25% VWR Cat #02-0154-0100
PBS VWR Cat #E504
Smooth Muscle Cell Growth Medium 2 and its Supplement Mix Promocell Cat #C-22062
Pyruvate Gibco Cat #11360
Glutamax Gibco Cat #35050
L-Proline Sigma Cat #D49752
T3 Sigma Cat #T6397
Rosiglitazone Sigma Cat #R2408-10MG
TrypLE Express Enzyme (1X), phenol Thermo Fisher Scientific Cat #12605010

Critical commercial assays

Insulin ELISA Millipore Cat #EZRMI-13K
Adiponectin ELISA Sigma Cat #RAB1115-1KT
FGF21 ELISA BioVendor R&D Cat #RD291108200R
Qiagen RNeasy Plus Mini Kit Qiagen Cat #74134
Agilent BioAnalyzer RNA Nano Kit Agilent Technologies Cat #5067-1511
Invitrogen Qubit RNA HS Assay Kit Thermo Fisher Scientific Cat #Q32852
NEBNext Ultra II Directional RNA Library Prep Kit NEB Cat #E7760L
NEBNext Poly (A) mRNA Magnetic Isolation Module NEB Cat #E7490
Agilent BioAnalyzer HS DNA Kit Agilent Cat #5067-4626
Invitrogen Qubit DNA HS Assay Kit Thermo Fisher Scientific Cat #Q32854

Deposited data

Bulk RNA-sequencing data (Liver) Submitted on NCBI GEO database (https://www.ncbi.nlm.nih.gov/geo/) Accession number:
GSE250078

Experimental models: Cell lines

AgeX-NP88 cell line AgeX Therapeutics Not Applicable

Experimental models: Organisms/strains

FGF21 Knock-out mice Jackson Laboratory B6.129Sv(Cg)-Fgf21tm1.1Djm/
Wild-type mice Charles River laboratories C57BL/6J
Luciferase Transgenic mice Jackson Laboratory FVB-Tg [CAG-luc,-GFP] L2G85Chco/J
NSG mice Jackson Laboratory NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ

Oligonucleotides

Oligonucleotides This paper: Table S1

Software and algorithms

GraphPad Prism 7 GraphPad Software https://www.graphpad.com
R version 4.2.2 R Development Core Team, 2011 https://www.r-project.org/
Fastp version 0.20.0 Shifu Chen Shifu Chen. 2023. Ultrafast one-pass FASTQ data preprocessing, quality control, and deduplication using fastp. iMeta 2: e107. https://doi.org/10.1002/imt2.10778
Kallisto version 0.46.1 Pachter Lab Nicolas L Bray, Harold Pimentel, Páll Melsted and Lior Pachter, Near-optimal probabilistic RNA-seq quantification, Nature Biotechnology 34, 525–527 (2016), https://doi.org/10.1038/nbt.351979
clusterProfiler version 4.6.0 Guangchuang Yu Yu G, Wang L, Han Y and He Q. clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS: A Journal of Integrative Biology. 2012, 16(5):284-28780
Image J NIH Rasband, W.S., ImageJ, U. S. National Institutes of Health, Bethesda, Maryland, USA, https://imagej.net/ij/, 1997-2018.81