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. Author manuscript; available in PMC: 2024 Feb 7.
Published in final edited form as: Dev Cell. 2022 Dec 8;57(24):2699–2713.e5. doi: 10.1016/j.devcel.2022.11.012

Table 1. Comparison of EC specific genes in different cell types.

Top 50 marker genes of tissuespecific EC populations from Table S2 in Kaluck et al11 compared to the top 50 mRNAs expressed in skin wound ECs from GSE142471. mRNAs shared with skin wound ECs in each tissue are highlighted in yellow.

Data from Kalucka et al., 2020 Table S2 Data from Wasko et al. Table l Top 50 upregulate d genes in wounded ECs
Top-50 marker genes of tissue- specific EC phenotypes

Brain-largeartery Brain-capillary Brain-largevein Testis-largeartery Testis-capillary Liver-Largeartery Liver-capillary Liver-proliferating Lung-artery Lung-capillary 1 Lunc-capillary 2 Colon-artery Colon-capillary 1 Colon-capillary 2 Skin wound EC
Mgp Cxcl12 Tmsb10 Edn1 Car4 Sdc1 Dnase1l3 Stmn1 Mgp Car4 Gpihbp1 Clu Car4 Esm1 Cst3
Cytl1 Spock2 Vcam1 Ifi27l2a Ptn Clu Clec4g Hmgb2 Tm4sf1 Igfbp7 Sema3c Gja4 Rgcc Plpp3 Scarb1
Fbln5 Gm9946 Slc38a5 Sox17 Slco1a4 Ehd4 Stab2 H2afz Cxcl12 Emp2 Gm12216 Fbln5 Plpp1 Nrp1 Lrat
Clu Lrrn3 Icam1 Gadd45g Bsg Cyp1a1 Ctsl Cdkn1a Plat Pmp22 Stmn1 Glul Aplnr Mef2c Pltp
Eln Gstm7 Tmem252 Amd1 Gpcpd1 Plac8 Bmp2 Top2a Plac8 Fibin Sox17 Azin1 Ramp3 Cd24a Bcam
Bgn Palm Lcn2 Ssu2 Slc3a2 Col8a1 Maf Cdk1 Gja4 AW112010 Ier3 Igfbp4 Col4a1 Ehd4 S100a11
Igfbp4 Tbx3 Vwf Ptprr Ier3 Lrg1 Gatm Cks2 Mecom Cyp4b1 Plvap Stmn2 Sparc Tmem176a Ly6c1
Cfh Prdm16 Ctsc Crip1 Ephb1 Mgp Kdr Birc5 Igfbp4 Ptp4a3 Socs3 S100a6 Nkx2−3 Fam167b Apoe
Lmcd1 Rasgrp2 Tgm2 Ptma Caskin2 Mecom Mt1 Tuba1b Atp13a3 Sept4 Wfdc1 Edn1 Hspg2 Rbp7 Rasa4
Bpgm Cd83 Ackr1 S100a4 Tmem201 Cd200 Plpp3 Tk1 Apoe Ednrb Aplnr Sox17 AW112010 Col13a1 Pfn1
Cmip Pik3ip1 Apod Wfdc1 Kazn Fbln2 Cyp4b1 Hmgn2 Gja5 Cd34 Sgk1 Sema3g Mgll Oaz2 Slc30a1
Htra1 Pmaip1 Apoe Cav1 Cspp1 Hspb1 Gpr182 Lgals1 Fxyd5 Prx H2-Ab1 Ace Sparcl1 Tmem176b Lgals1
Sat1 Tnfrsf21 Nfkbia Ier2 Usp32 AU021092 Mrc1 Cks1b Tsc22d1 Chst1 Cadm1 Cst3 Fmo2 Smco4 Cxcl2
Bmx Prkcb Hs3st1 Jun Setdb1 Ly6c1 Fam167b Nucks1 Edn1 Tbx3 Casc4 Tsc22d1 Trp53i11 Ces2e Cxx1a
Reck Plekhh2 Ptn Alox12 Zdhhc9 Cyr61 Fcgr2b Pcna Efnb2 Clu Btg2 Tspan8 Col15a1 Vwa1 Marcksl1
Emp3 Gpr160 Ch25h Btg2 Mcf2 Cd63 Adam23 H2afx Sparcl1 Nrp1 Sparc Slc6a6 Car8 Jam3 Serf2
Vim Rftn2 Fth1 Lmna Tiam1 Adgrg6 Oit3 Cdca8 Htra1 Kdr Kit Fbln2 Lamb1 Plscr2 Thy1
S100a11 Cnnm2 Ptgs2 Tgfb2 Aars2 Plvap Cldn5 Spc24 Fbln2 Ly6c1 Hilpda Tm4sf1 Sgk1 Kdr C1qtnf9
Timp2 Krt222 Cxcl1 Klf2 Ndufaf1 Gja5 Apoe Lockd Hey1 Bcam Tubb2a Heg1 Enpp6 Thbd Gm694
Ptgis Helz Net1 Stmn1 Mamstr Crip1 Lgmn Smc4 Fam3c Tmcc2 Lpl Gja5 Ivns1abp Hspb1 Col18a1
Fhl1 Nanos1 Itih5 Cdkn1c Nol4l Cst3 Stab1 Cdkn2c Sulf1 Tppp3 Sox11 Sat1 Jun Pltp Cxcl12
Ccnd2 Naa30 Rgs16 Chd3 Mfsd12 Npr3 Clec1b Hjurp Sema3g Rgs12 Plk2 Gadd45g Sox4 Ncoa7 Ndrg1
Cp Napg Rnase4 Klf4 Alg6 Sncg Hpgd Smc2 Id1 Phlda3 Jund Mast4 Dusp6 Flt1 Gng5
Emp1 Ric1 Mt1 Eef1a1 Atg4a Ednrb Cd300lg Tyms Mgst1 Hspb1 Atp1a1 Hey1 Mcam Slc16a1 Lgals7
Id2 Nt5dc2 Csf1 Cdk19 Sdad1 Ly6e Aass Tubb6 Heg1 Apln H2-Q6 Plat Apold1 Gm13889 Pecam1
Rhob Vangl2 Serpinb9 Hspa1a Tyw5 Mgst1 Akr1b8 Racgap1 Efna1 Enho Ncald Fn1 Ankrd37 Plscr1 Grem1
Tm4sf1 2310040G24Rik Rbp1 Co18a1 Hspb6 Cd34 Tfpi Lmnb1 Bmx Pcdh1 Ccr12 Ssu2 Ednrb Cd200 Fkbp1a
Fn1 Htatip2 Gm9844 Zfp36 0610010F05Rik Nrg1 Col13a1 Nrm Sat1 Nhlrc2 Npr3 Mecom Rapgef4 Exoc3l2 Krt5
Emp2 Utp14b Mt2 Rsad2 Galc Vegfc Mt2 Fen1 Crip1 Ly6a Ier2 Eps8l2 Thbs1 Lrrc3b Fam167b
Pam Rbfa Lrg1 Bmp2 Pign Tm4sf1 Dab2 Fbxo5 Cdh13 Kitl Adrb1 ssu2 Fos Ptp4a3 Rhoc
Cd82 Adck2 Nr2f2 Hist1h1c Gm17619 Ldb2 Lpar6 Cdc20 Mmrn2 Pllp Car2 Syt15 Itga6 Itm2a Col4a1
Jag1 Eif2ak4 Gbp4 Neb1 Zcchc10 Ier2 Clec14a Mcm5 Ccnd2 Cldn5 Rdx Hspala Chrm2 Pcdh17 Fos
Spint2 Med27 Jun Akap13 Fbxw4 Efna1 Mertk Cenpa Slc6a6 Tmem176a Nckap5 8430408G22Rik Apln Tnfaip2 Tmsb4x
Irf6 2700046A07Rik Il1r1 Med1 Gba2 Ddit4 Manf Gmfg Rps28 Rasgrp2 H2-Eb1 Crip1 Rad51ap1 Rsad2 Myct1
Kcnn4 Pias3 Tmem176b Cit Klhl17 Dusp1 Slc40a1 Ccdc34 Rbp7 Mgll Junb Dusp1 Selenbp1 Id3 Prelid1
Atp2a3 Fam136a Foxf1 Dbndd2 Mms19 Syt15 Chst15 Ncapd2 Nrarp Tbx2 Plcb1 40787 F2r13 Crim1 Rasd1
Ace 2610301B20Rik Cpe 2810403A07Rik Marf1 Fbln5 Ftl1 Tcf19 8430408G22Rik Aard Ifi47 Ybx1 Gbp2 Actg1 Col4a2
Nuak1 A630072M18Rik Zfp36l2 Ccnl1 Zfp335 Abcg2 Sparc Rfc3 Camk2d Rprml Car14 S100a4 Iigp1 Gas7 Ctla2a
Gja4 Nup37 Serpinb6b Rnf152 Dgkq Gm13889 Cyp26b1Myo10 Cxcl10 Cdc42ep3 Tspan8 Tmem221 Car7 Hes1 Serpinb1a mt-Nd5
Lmo1 Dnase2a Dusp23 Ppp1r15a Gxylt1 Fxyd5 Myo10 Ltc4s Psen2 Stmn2 Ada mts1 Bmx Hrct1 Prdm1 Csrp2
Sdc1 Zfp788 Polk Tmem243 Cwc27 Utrn Mylip Hsp90aa1 Gata6 Dhrs3 Ldb2 Klf4 Arrdc3 Efhd1 Hspb1
Synpo Slc43a2 Cd14 Smarcd1 Fam212b Lmo7 Adgrf5 Lig1 Rgs3 Plaur Pcdh17 Htra1 Chchd10 Penk Cf11
Edn1 Usp43 Dnm3 Il20rb Traf3ip1 Fos Cpne2 Usp1 Tmem158 Ccdc184 Irf1 Jag1 Btg2 Abcg2 RP23-354H24.9
Mmrn2 Cbx8 Il6st Cd36 Fbxl18 8430408G22Rik SlcB9a8 Bok Mast4 Icam1 Cdc42ep4 Pcsk5 H1f0 Actb Sectm1a
Tspan7 Nhlrc3 Car14 Adarb1 Gm20045 Ltbp4 Ets2 Raph1 Fmo2 Cd24a Pxdc1 Lima1 Bpgm Akr1c14 Tgfbi
Phlda3 Clk2 Gm5127 Klhdc8b NrarP Plet1os Pold2 Fads3 Slc48a1 Vgll4 Lamb2 Xpc Nr5a2 Slc3a2
Arl15 Angptl4 Wnt5a RasgrP3 Cmklr1 Itpkb Nav2 Mcam Grina Ankrd44 Efnb2 Col4a3 B2m Myeov2
Dkk2 BC0B70B4 Sema6a Tmbim1 Cd9 Hsp90b1 Rpa2 Itga6 Scn7a Cd1d1 Atp13a3 Ankrd44 Tnfrsf11b Bsg
Fstl1 Naa16 Flrt2 Rsrp1 Ehd2 Cd84 Ezh2 Lgals3bp Serpine1 Rapgef4 Mal Hic1 Rcan2 Sectm1b
H2-Q6 B4galt7 Car2 Ppp1r15a Trim47 Itga9 Rrm1 Ebf1 Phlda1 Tubb2b Adamts1 Serpine1 Cdc14a Hist1h2bc