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. 2023 Dec 19;11(2):uhad269. doi: 10.1093/hr/uhad269

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© The Author(s) 2024. Published by Oxford University Press on behalf of Nanjing Agricultural University.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Phylogenetic and evolutionary analysis of the Agave hybrid genome, along with a comparative genomic analysis. A Venn diagram representing the distribution of shared gene families among A. hybrid and other 13 species.B Phylogenetic tree of 14 species and gene family contraction and expansion compared with the related species (Asparagus setaceus and Asparagus officinalis). Gene family contractions and expansions are indicated in different colors, respectively. Inferred divergence times (million years ago, Mya) are denoted at each node in black. C Syntenic pattern among Amborella trichopoda, A. setaceus, and A. hybrid genomes. Each A. trichopoda region aligns with up to two regions in A. setaceus. Two homologous A. setaceus regions align with four regions in A. hybrid. Examples are highlighted in color. D 4DTv distribution in A. hybrid and other representative plant species. E Comparison of A. hybrid genome with A. officinalis genome. F The insertion dates of repeats in A. hybrid genome.