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. 2024 Feb 7;20:49. doi: 10.1186/s12917-024-03890-7

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© The Author(s) 2024

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 4 — Functional analysis of the overlapping genes between the differentially expressed (DE) mRNAs and the potential target genes of DE lncRNAs in avian pathogenic E. coli infected macrophages (APEC) vs. non-infected macrophages (Control). A. The potential target genes of the identified DE lncRNAs. B. Venn diagram of the number of the overlapping genes between the DE mRNAs and the target genes of DE lncRNAs in APEC vs. Control. C. GO analysis of the overlapping genes between the DE mRNAs and the target genes of DE lncRNAs in APEC vs. Control. a, P2RY8; b, GPR35L; c, GPR35; d, GPR65; e, LOC112532977; f, LFNG; g, GALNT11; h, MFNG; i, SLC12A4; j, ADD1; k, SLC12A9; l, JUP; m, PRKCB; n, BRCA1; o, RHOB; p, VEGFA; q,CD86; r, TNFSF15; s, LY86; t, TNFSF8; u, TLR7; v, CTSV; w, CD244; x, RASGEF1A; y, RASGEF1B; z, DOCK8; aa, LOC429518; ab, RND2; ac, CHRNA1; ad, PHLPP1; ae, LOC428967; af, LRRK1; ag, FAM13A; ah, AFDN; ai, RASSF5; aj, IL1RAPL2; ak, RHPN1; al, TCP11L1; am, SRGAP2; an, PLPP1; ao, BCL2A1; ap, IKBKE; A, positive regulation of Rho protein signal transduction; B, regulation of Notch signaling pathway; C, cell volume homeostasis; D, positive regulation of angiogenesis; E, immune response; F, small GTPase mediated signal transduction; G, signal transduction; H, intrinsic apoptotic signaling pathway in response to DNA damage. D. KEGG analysis of the overlapping genes between the DE mRNAs and the target genes of DE lncRNAs in APEC vs. Control. E. Cytoscape visualizing of the overlapping DE genes and their corresponding lncRNAs that enriched in the immune related pathway