Table 1. Average Distances (Å) Calculated for the most Relevant Species (RS, TS1, I1, I2, TS2, and PS) along the Acylation-Deacylation Mechanism.
| acylation | ||||||
|---|---|---|---|---|---|---|
| FAST-PETase |
PETase |
|||||
| distances | RS | TS1 | I1 | RS | TS1 | I1 |
| C2(PET)–Oγ(Ser160) | 2.62 ± 0.06 | 1.44 ± 0.04 | 1.35 ± 0.03 | 2.67 ± 0.09 | 1.40 ± 0.04 | 1.35 ± 0.03 |
| C2(PET)–O1(PET) | 1.35 ± 0.03 | 1.86 ± 0.07 | 4.21 ± 0.08 | 1.35 ± 0.03 | 1.96 ± 0.06 | 4.6 ± 0.2 |
| Oγ(Ser160)–Hγ(Ser160) | 1.00 ± 0.03 | 2.01 ± 0.13 | 5.1 ± 0.2 | 0.99 ± 0.03 | 2.6 ± 0.2 | 5.3 ± 0.3 |
| Nε(His237)–Hγ(Ser160) | 1.87 ± 0.09 | 1.04 ± 0.03 | 5.4 ± 0.2 | 1.92 ± 0.14 | 1.21 ± 0.11 | 6.8 ± 0.6 |
| Hγ(Ser160)–O1(PET) | 3.3 ± 0.2 | 2.04 ± 0.14 | 0.97 ± 0.02 | 3.3 ± 0.2 | 1.34 ± 0.14 | 0.98 ± 0.03 |
| Oδ1(Asp206)–Hδ(His237) | 3.0 ± 1.2 | 2.2 ± 0.3 | 3.1 ± 0.6 | 2.2 ± 0.3 | 2.0 ± 0.2 | 2.8 ± 0.7 |
| Oδ2(Asp206)–Hδ(His237) | 3.0 ± 1.0 | 2.2 ± 0.3 | 2.4 ± 0.7 | 3.1 ± 0.3 | 2.8 ± 0.3 | 3.1 ± 0.6 |
| H(Met161)–O2(PET) | 2.2 ± 0.2 | 1.83 ± 0.10 | 2.0 ± 0.2 | 2.2 ± 0.2 | 1.89 ± 0.13 | 2.1 ± 0.2 |
| H(Tyr87) −O2(PET) | 1.87 ± 0.13 | 1.85 ± 0.11 | 2.1 ± 0.2 | 1.94 ± 0.14 | 1.83 ± 0.11 | 2.0 ± 0.2 |
| deacylation | ||||||
|---|---|---|---|---|---|---|
| FAST-PETase |
PETase |
|||||
| distances | I2 | TS2 | PS | I2 | TS2 | PS |
| C2(PET) −Oγ(Ser160) | 1.34 ± 0.03 | 1.49 ± 0.05 | 2.78 ± 0.05 | 1.34 ± 0.03 | 1.44 ± 0.04 | 2.55 ± 0.04 |
| C2(PET) −Ow(water) | 3.68 ± 0.05 | 1.49 ± 0.05 | 1.33 ± 0.03 | 3.67 ± 0.07 | 1.80 ± 0.05 | 1.34 ± 0.03 |
| Ow(Water)–Hw(water) | 0.97 ± 0.02 | 2.11 ± 0.13 | 2.7 ± 0.2 | 0.97 ± 0.03 | 1.93 ± 0.13 | 2.96 ± 0.17 |
| Nε(His237)–Hw(Water) | 4.65 ± 0.15 | 1.03 ± 0.03 | 1.96 ± 0.10 | 4.57 ± 0.14 | 1.04 ± 0.03 | 1.85 ± 0.09 |
| Oγ(Ser160)–Hw(Water) | 4.01 ± 0.11 | 2.32 ± 0.06 | 0.99 ± 0.03 | 4.06 ± 0.18 | 2.06 ± 0.11 | 0.99 ± 0.03 |
| Oδ1(Asp206)–Hδ(His237) | 3.6 ± 1.1 | 2.0 ± 0.3 | 2.4 ± 0.5 | 2.4 ± 0.5 | 1.9 ± 0.2 | 2.3 ± 0.4 |
| Oδ2(Asp206)–Hδ(His237) | 3.5 ± 1.1 | 2.7 ± 0.4 | 3.1 ± 0.5 | 3.3 ± 0.5 | 2.9 ± 0.5 | 3.4 ± 0.4 |
| H(Met161)–O2(PET) | 2.2 ± 0.3 | 1.9 ± 0.13 | 1.91 ± 0.13 | 1.97 ± 0.17 | 1.88 ± 0.15 | 2.05 ± 0.18 |
| H(Tyr87) −O2(PET) | 2.2 ± 0.3 | 1.9 ± 0.2 | 1.93 ± 0.15 | 1.95 ± 0.14 | 1.81 ± 0.11 | 1.88 ± 0.11 |