Table 3.

Bonferroni Adjusted Significant GTEx V8 eQTL Calculator Results and LocusFocus Results

Gene	SNP	p	NES	Tissue	COLOC2	SS
CACNA1C	rs2370413	0.000041	−0.38	Brain—Cerebellar Hemisphere	0.98	4.79 × 10−8
GABRA2	rs279829	2.5E−06	0.2	Brain—Cortex	0.99	2.69 × 10−7
GABRA2	rs279829	0.000056	0.18	Brain—Nucleus accumbens (basal ganglia)	0.98	5.37 × 10−7
KPNA2	rs62085661	0.000035	0.23	Brain—Caudate (basal ganglia)	0.99	4.57 × 10−6
ECE2	rs3914188	0.000051	−0.22	Brain—Cerebellar Hemisphere	0.0048	8.51 × 10−4
ECE2	rs3914188	3.8E−08	−0.42	Brain—Anterior cingulate cortex (BA24)	0.0048	6.46 × 10−4
ECE2	rs3914188	4.8E−06	−0.24	Brain—Cerebellum	0.0031	0.0028
KIRREL3	rs57306615	0.000048	−0.41	Brain—Spinal cord (cervical c-1)	0.0061	1.00
TSNARE1	rs12675715	0.000025	0.36	Brain—Spinal cord (cervical c-1)	5.6 × 10−5	6.03 × 10−8

NES signifies normalized expression score. Tissue names are based on the GTEx tissue codes. COLOC2 signifies COLOC2-based posterior probability of co-localization between GTEx V8 and GWAS data, while simple sum (SS) signifies SS probability of this co-localization. Top sections include significant co-localization based on both COLOC2 and LocusFocus SS.