TABLE 4.

Database homologies of the ORFs in contig C

ORF	BLASTx hit	Accession no.	Organism	Expect value	Reference(s)
orfde1	Methionine aminopeptidase A (map)	P53579	Synechocystis sp.	6e-59	21
orfde2	Serum resistance locus brkB	D64004	Synechocystis sp.	2e-07
	Serum resistance locus brkB	I40328	Bordetella pertussis	2e-04	11
orfde3	Putative undecaprenyl-phosphate N-acetylglucosaminyltransferase (tagO)	gn1|PID|e11	Bacillus subtilis	1e-57	Unpublished data
		68896
	Lipophilic protein which affects bacterial lysis rate and methicillin resistance level (llm)	D21131	Staphylococcus aureus	4e-57	29
	Undecaprenyl-phosphate N-acetylglucosaminyltransferase (rfe)	S30678	Escherichia coli	4e-19	31
orfde4	EpsX	X81320	Acinetobacter calcoaceticus	1e-25	Unpublished data
	Hypothetical 31.1-kDa protein in gnd-rfc intergenic region (orf264)	P36667	E. coli	4e-12	27, 59
orfde5	RfbC protein	S28579	Yersinia enterocolitica	0.14
	dTDP-rhamnosyltransferase (rfbF)	P37782	Shigella flexneri	0.14	33
orfde5_6	Unnamed protein product	AB002668	Actinobacillus actinomycetemcomitans	5e-18	60
	MigA	U70729	Pseudomonas aeruginosa	5e-11	54
	PssF	AF028810	Rhizobium leguminosarum bv. viciae	3e-09	18
orfde6	Glucose-1-phosphate thymidyltransferase (cps19fL)	U09239	Streptococcus pneumoniae	e-131	32
orfde7	dTDP-4-dehydrorhamnose 3,5-epimerase (rfbC)	P26394	Salmonella enterica	1e-44	20
orfde8	dTDP-glucose-4,6-dehydratase (rmlB)	D78182	Streptococcus mutans	e-150	52
orfde9	32.3-kDa cps19fO gene product	U09239	S. pneumoniae	2e-97	32
	dTDP-4-keto-l-rhamnose reductase (rmlD)	AB000631	S. mutans	1e-94	51
orfde10	Unnamed protein product	AB002668	A. actinomycetemcomitans	1e-30	60
	ss-1,3-N-Acetylglucosaminyltransferase	X85787	S. pneumoniae	0.001	22, 23
orfde11	Teichoic acid translocation permease protein TagG (tagG)	P42953	B. subtilis	2e-48	25
	O-antigen export system permease protein RfbA (rfbA)	Q50862	Myxococcus xanthus	3e-23	14
orfde12	ATP-binding cassette membrane transporter AbcA (abcA)	Q07698	Aeromonas salmonicida	5e-58	8
	O-antigen export system ATP-binding protein RfbB (rfbB)	Q50803	M. xanthus	8e-56	14
	Teichoic acid translocation ATP-binding protein TagH (tagH)	P42954	B. subtilis	1e-51	25
orfde13	No good match
orfde14	No good match
orfde15	Hypothetical 102.8-kDa protein Y4gI	P55465	Rhizobium sp. strain NGR 234	4e-68	12
	O-antigen biosynthesis protein RfbC (rfbC)	U36795	M. xanthus	5e-52	14
	EpsI	U40830	Streptococcus thermophilus	6e-14	50
	EspG	U93364	Lactococcus lactis cremoris	2e-12	53
	β-1,4-Galactosyltransferase	X85787	S. pneumoniae	1e-11	22, 23
orfde16	Hypothetical 102.8-kDa protein Y4gI O-antigen biosynthesis protein RfbC (rfbC)	P55465	Rhizobium sp. strain NGR234	e-128	12
		Q50864	M. xanthus	6e-16	14