hdWGCNA |
high-dimensional weighted gene co-expression network analysis |
LRG |
liver metastasis-related gene |
GEO |
Gene Expression Omnibus |
TCGA |
The Cancer Genome Atlas |
PCA |
principal component analysis |
UMAP |
Uniform Manifold Approximation and Projection |
LASSO |
Least Absolute Shrinkage and Selection Operator |
SVM-RFE |
Support Vector Machine Recursive Feature Elimination |
SVM |
support vector machines |
RF |
Random Forest |
ROC |
Receiver Operating Characteristic |
GSVA |
Gene Set Variation Analysis |
KEGG |
Kyoto Encyclopedia of Genes and Genomes |
PPI |
protein-protein interaction |
TF |
transcription factor |
IC50 |
half-maximal inhibitory concentration |
WGCNA |
Weighted Gene Co-expression Network Analysis |
AUC |
area under the curve |
ssGSEA |
Single-Sample Gene Set Enrichment Analysis |
CopyKAT |
Copy Number Karyotyping of Aneuploid Tumors |
NK |
natural killer cells |
PMN |
Polymorphonuclear neutrophils |
ICAM-1 |
intercellular adhesion molecule-1 |
TME |
tumor microenvironment |
VEGF |
vascular endothelial growth factor |
Treg |
regulatory T cells |
MDSC |
myeloid-derived suppressor cells |
PAK |
P21-activated kinase |
PAK2 |
P21-activated kinase 2 |
CEACAM |
carcinoembryonic antigen-related cell adhesion molecule |
HSPGs |
Heparan sulfate proteoglycans |
HS |
heparan sulfate |
GAG |
glycosaminoglycan |
ECM |
extracellular matrix |
EGF |
Epidermal Growth Factor |
EGFR |
Epidermal Growth Factor Receptor |
NCOA |
Nuclear Receptor Coactivator |
ER |
estrogen receptor |
AR |
androgen receptor |