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. 2024 Jan 26;15:1347683. doi: 10.3389/fimmu.2024.1347683
hdWGCNA high-dimensional weighted gene co-expression network analysis
LRG liver metastasis-related gene
GEO Gene Expression Omnibus
TCGA The Cancer Genome Atlas
PCA principal component analysis
UMAP Uniform Manifold Approximation and Projection
LASSO Least Absolute Shrinkage and Selection Operator
SVM-RFE Support Vector Machine Recursive Feature Elimination
SVM support vector machines
RF Random Forest
ROC Receiver Operating Characteristic
GSVA Gene Set Variation Analysis
KEGG Kyoto Encyclopedia of Genes and Genomes
PPI protein-protein interaction
TF transcription factor
IC50 half-maximal inhibitory concentration
WGCNA Weighted Gene Co-expression Network Analysis
AUC area under the curve
ssGSEA Single-Sample Gene Set Enrichment Analysis
CopyKAT Copy Number Karyotyping of Aneuploid Tumors
NK natural killer cells
PMN Polymorphonuclear neutrophils
ICAM-1 intercellular adhesion molecule-1
TME tumor microenvironment
VEGF vascular endothelial growth factor
Treg regulatory T cells
MDSC myeloid-derived suppressor cells
PAK P21-activated kinase
PAK2 P21-activated kinase 2
CEACAM carcinoembryonic antigen-related cell adhesion molecule
HSPGs Heparan sulfate proteoglycans
HS heparan sulfate
GAG glycosaminoglycan
ECM extracellular matrix
EGF Epidermal Growth Factor
EGFR Epidermal Growth Factor Receptor
NCOA Nuclear Receptor Coactivator
ER estrogen receptor
AR androgen receptor