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. 2024 Feb 8;14:3246. doi: 10.1038/s41598-024-53316-5

Table 3.

Average MM-GBSA binding energy calculation of LdmtPRI1-benfotiamine and LdmtPRI1-capecitabine obtained from MD Simulation trajectories.

Energies (kcal/mol) PRI1-benfotiamine PRI1-capecitabine
ΔdG_bind − 69.79 ± 11.49 − 39.39 ± 8.21
ΔdG_bind_Coulomb 19.24 ± 4.91 39.39 ± 5.78
ΔdG_bind_Covalent 2.48 ± 0.26 3.18 ± 0.35
ΔdG_bind_Hbond − 7.76 ± 0.006 − 1.86 ± 0.002
ΔdG_bind_Lipo − 24.69 ± 1.74 − 26.35 ± 1.96
ΔdG_bind_Packing − 0.05 ± 0.001 − 0.00 ± 0.00
ΔdG_bind_vdW − 51.16 ± 1.89 − 48.16 ± 1.54