Table 1. Genome data for Archips xylosteana, ilArcXylo1.1.
| Project accession data | ||
|---|---|---|
| Assembly identifier | ilArcXylo1.1 | |
| Species | Archips xylosteana | |
| Specimen | ilArcXylo1 | |
| NCBI taxonomy ID | 1100919 | |
| BioProject | PRJEB56130 | |
| BioSample ID | SAMEA7701541 | |
| Isolate information | ilArcXylo1, female: whole organism (DNA sequencing)
ilArcXylo2: whole organism (Hi-C data) |
|
| Assembly metrics * | Benchmark | |
| Consensus quality (QV) | 65.6 | ≥ 50 |
| k-mer completeness | 100% | ≥ 95% |
| BUSCO ** | C:98.4%[S:97.8%,D:0.5%],
F:0.4%,M:1.2%,n:5,286 |
C ≥ 95% |
| Percentage of assembly
mapped to chromosomes |
99.57% | ≥ 95% |
| Sex chromosomes | W and Z sex chromosomes |
localised homologous
pairs |
| Organelles | Mitochondrial genome assembled | complete single alleles |
| Raw data accessions | ||
| PacificBiosciences SEQUEL II | ERR10287579 | |
| Hi-C Illumina | ERR10297859 | |
| Genome assembly | ||
| Assembly accession | GCA_947563465.1 | |
| Accession of alternate haplotype | GCA_947563285.1 | |
| Span (Mb) | 650.6 | |
| Number of contigs | 136 | |
| Contig N50 length (Mb) | 20.4 | |
| Number of scaffolds | 113 | |
| Scaffold N50 length (Mb) | 22.4 | |
| Longest scaffold (Mb) | 51.3 | |
| Genome annotation | ||
| Number of protein-coding
genes |
19,861 | |
| Number of gene transcripts | 20,029 | |
* Assembly metric benchmarks are adapted from column VGP-2020 of “Table 1: Proposed standards and metrics for defining genome assembly quality” from ( Rhie et al., 2021).
** BUSCO scores based on the lepidoptera_odb10 BUSCO set using v5.3.2. C = complete [S = single copy, D = duplicated], F = fragmented, M = missing, n = number of orthologues in comparison. A full set of BUSCO scores is available at https://blobtoolkit.genomehubs.org/view/Archips%20xylosteana/dataset/CANOAX01/busco.