Table 3.
Top inactive HK-CPs in cancer cell lines
| HK-CP region | Gene name | TSS | % Cancer cell lines | % Healthy cell types | Distance to the end of the chromosome |
|---|---|---|---|---|---|
| chr19:58058989–58059488 | ZNF135 | 58,059,239 | 11.53 | 95.23 | 558,377 |
| chr19:57935138–57935637 | ZNF418 | 57,935,387 | 30.76 | 100.00 | 682,229 |
| chr19:57708962–57709461 | ZNF154 | 57,709,204 | 11.53 | 95.23 | 908,412 |
| chr19:57583726–57584309 | ZIK1 | 57,584,140 | 26.92 | 100.00 | 1,033,476 |
| chr19:56507593–56508092 | ZNF471 | 56,507,850 | 30.76 | 95.23 | 2,109,766 |
| chr19:56477152–56478177 | ZNF667-AS1 | 56,477,590 | 15.38 | 95.23 | 2,140,026 |
| chr19:56477152–56478177 | ZNF667 | 56,477,374 | 15.38 | 95.23 | 2,140,242 |
| chr19:53254646–53255153 | ZNF677 | 53,254,898 | 23.07 | 95.23 | 5,362,718 |
| chr19:51887687–51888274 | ZNF649-AS1 | 51,888,025 | 26.92 | 95.23 | 6,729,591 |
| chr19:51887687–51888274 | ZNF577 | 51,887,980 | 26.92 | 95.23 | 6,729,636 |
| chr19:36605027–36605554 | ZNF382 | 36,605,313 | 34.61 | 90.47 | 22,012,303 |
| chr19:36605027–36605554 | ZNF529 | 36,605,276 | 34.61 | 90.47 | 22,012,340 |
Inactive HK-CPs found in <35% of cancer cells ranked by their distance to the end of the chromosome they reside in, e.g. telomere regions